Pectinophora gossypiella (pink bollworm): 126374960
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Entry
126374960 CDS
T09293
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126374960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126374960
Enzymes [BR:
pgw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126374960
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
126374960
mRNA degradation factors
3'-5' decay
Ski complex
126374960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
DEXQc_Suv3
Helicase_C
ResIII
MTR4_beta-barrel
MTR4-like_stalk
bHLH_IRO3
ATPase_2
Prefoldin_2
Motif
Other DBs
NCBI-GeneID:
126374960
NCBI-ProteinID:
XP_049877714
LinkDB
All DBs
Position
18:8286589..8299671
Genome browser
AA seq
1258 aa
AA seq
DB search
MSVDAEDEFSDFKLPPILDDLNERVKEYLLKPERLSIHQWERSQTHWHRQTDVDSLFKID
DDDIGPDTTLEVVRDPITGQIIGLEEISIPVEDDEDSLSMSRAPLPPGLATRGSTTQNPF
LPAGFEEELLKTLEEAAQHKEININLDADEPGKFLGEDLLVIPPGCKEGAIFASDGMTVL
NHPNKEEVPSSDSKEDVDIQIKINLEEVVDSNAHLVGLWKDDDEQQLKPRQLPKKPQEVD
SDSKDDNFLEGTIIQPPVELPEIPILNISGSAVRAGAMSTEWAEMIDVSQPVPEFKEKIK
DMAHSYPFELDNFQKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNCTRAIYTSP
IKALSNQKYNDFNKMFGEVGLLTGDLQINATASCLVMTTEILRSMLYCGSDVTRDLEFVI
FDEVHYINNAERGYVWEEVLILLPAHVSIVMLSATVPNTLQFADWVGRTKKRKVYVVSTP
KRPVPLCHYLYTGAGGKSKNERFLVVDQEGNFQLRGYNEAVAAKKAREDKNEHKKNFGPK
AGGKQYNNPKADQTMWVAFIDHLRTHDKLPVVAFTLSRNRCDQNAENLMSVDLTTAKEKG
HIRSFFQKCLQRLKEPDRKLPQVVRLQRVLENGIGVHHSGILPLLKEIVEMLFQSGFVKI
LFATETFAMGVNMPARTVVFDETTKYDGMQRRTLAPAEYIQMAGRAGRRGLDDTGTVIIL
CKDGVPDLMTLKGMMLGIPQKLSSQFRLTYAMILSLLRVATVSVEGMMQRSFREFNQIIQ
ADNYRKQLQLAEKEYSEKCSTPLASHLAPLASFYDAAAGYVDVLNEIMPILLSQPKVAKE
LVAGKIMIVSAGPFINQLSVYLNGNGPRQTPYKVLVLNTAVQDTTRYNFDVDDNWFRMLS
FSALYDSIGTEESTIDHTILCIAPKNVVAVTKMTLKIDPNLIIQDWEKRQMPRFKDAPVG
SSCASTVQELSRLSHAVRTGVTTLERISLTQYLSVSTGEILQTLDKMNKFQSELETLKKS
TDIANFKSEFAIVYERKQAERKRDKYKRLLSYENLALYPDYQRRLMVLRELNYIDEHDSV
ILKGRVACGMGTNELIISELVFRNVFTDKTPAEIAALLSCFVFQARTQVEPQLTERLEEA
VKTIEKIDEELTSIEYKYMVNQFEGQQERLNFGLVRVVYEWALEKPFAEIMDLTDVQEGI
IVRCIQQLHELLVDVKDAAVAIGDPKLQAKMMEASTAIKRDIVFAASLYTTQKETVVS
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtagacgctgaggacgagttttcagacttcaagttaccaccgattttggacgat
ttgaacgagcgtgtgaaagaatatctgctgaagccggagaggctgtctatccaccaatgg
gagcggtcacagacgcactggcatcgccagaccgatgtggattctttgttcaaaatagat
gacgatgacattgggcctgatactactcttgaggtggtaagagatccaataactggccag
ataattggtttagaagagattagcattccagtagaagatgacgaagacagtctctcaatg
tcccgggccccgctgccaccaggtctcgccactaggggctccactacacagaacccgttc
ctcccagcgggcttcgaagaagaactcctgaagaccttggaagaagctgcacagcataag
gagatcaatatcaaccttgatgctgatgagcctgggaagtttttgggagaagatctacta
gtaatccccccgggctgcaaggaaggagcgatattcgcgtctgacggtatgacagtcctc
aaccaccccaataaggaggaggttcctagctccgacagcaaagaggatgtggacatccag
atcaagatcaacttggaggaagttgttgatagcaatgctcatttagtaggcctttggaaa
gacgacgacgaacagcagttgaaaccaaggcagcttcctaaaaagccacaagaagtagac
tcggattcaaaagacgacaacttcctcgaaggcaccatcattcagcccccagtggaacta
ccagagattcctatcctgaacatctcggggtctgcagtgagggccggagccatgtccacg
gaatgggctgagatgatagatgtgtcacaacccgtgcccgagttcaaagagaagattaaa
gacatggcacattcgtatccatttgagttggataatttccaaaaacaggcgatattgaaa
ctagaagaaggacatcacgtgttcgttgcggctcacacctctgccggtaaaacagttgtg
gctgaatacgctattgcaatgtccagaagaaactgtaccagagcaatatacacgtcccca
atcaaagcactctccaaccagaagtacaatgacttcaacaagatgttcggcgaggtgggc
ctgttgaccggtgacctgcagatcaacgccaccgcctcttgtctcgtcatgaccaccgag
atactgcggtccatgctgtactgcggctcggatgtcactagggacctggagtttgtcatc
ttcgacgaagtgcattatattaacaatgctgagcgaggctacgtatgggaggaggtgctg
atcctgctgccagctcacgtgagcatcgtcatgttgagcgccacggtgcccaacacgctc
cagttcgcggactgggtcggccgcaccaagaagcggaaggtctacgtcgtctccaccccc
aaaagacccgtgccactctgtcattatctttatactggtgctggcggcaagtccaagaac
gagcggttcctagtggtggaccaagagggaaacttccagctgcgcgggtacaacgaggct
gtcgccgccaagaaggctcgcgaggacaagaacgaacacaagaagaactttggacctaaa
gctggtggcaagcagtacaacaacccgaaggcggaccagacgatgtgggtggcgttcata
gaccacctgcggacgcacgacaagctgcccgtcgtcgcgttcacactctcacggaacaga
tgtgatcaaaatgcggagaacttgatgtcagttgacctcactacagccaaagagaagggt
cacatacgttccttcttccagaaatgtctacaaaggctgaaagaaccagatagaaaactg
ccacaggtagtaagattacaaagagtgctggagaatggtatcggcgtccaccacagcggt
atcttgccgctgctgaaggaaatcgtcgagatgctcttccaatctggctttgtgaaaatc
ctgttcgcaacggaaactttcgcgatgggtgtgaacatgccggctcgtacggtggtgttc
gatgagacgaccaagtacgacgggatgcagcgacgcacgcttgcgcccgccgagtacata
cagatggcagggcgagctggacgacgaggtctggacgacacgggcacggtgataatcctg
tgcaaggacggcgtgcccgacctgatgacgctcaagggcatgatgcttggtatcccgcag
aaactctcctcgcagttccgactcacgtacgccatgatactcagtctattacgcgttgcg
acagtatcggtagaaggcatgatgcagcgttccttcagagagttcaaccagataatccaa
gctgacaactataggaaacagttacaactagcggagaaggaatattcagagaaatgcagt
acccctctggcgtcccacctcgcccctctagcgtccttctacgacgccgcagcaggctat
gtggatgtgctgaatgaaataatgccaatattgctgagtcaaccgaaagtcgccaaggaa
ttggtcgcgggcaagataatgatcgtctctgctgggccttttattaaccagttgagcgtt
tatttgaacggcaatgggccccgtcaaacgccgtacaaagtactggtgctgaacacggcg
gttcaagacaccactcgatacaacttcgatgtggacgacaactggttcagaatgctcagc
ttctctgctctctatgacagcatcggcaccgaagaaagtacaatagaccacacaattttg
tgcattgcgccgaagaatgtggtagcagtgaccaaaatgacgctcaagatcgaccccaac
ctcatcatacaggactgggagaagaggcaaatgccacgattcaaagacgcgccggtcgga
tctagctgcgcgagcacagtacaggaactgtcgcggttgtctcacgcggtgcgcaccggg
gtcaccacattggaacggatcagtctcacgcagtacttgtctgtcagcacgggggaaata
ctgcagacattggacaagatgaacaaattccagagtgagctagaaaccttgaagaaatcg
accgatatagcgaacttcaagtctgagtttgcaattgtatacgaaaggaagcaagcggaa
agaaaacgggacaaatataaacgcttattgtcttatgaaaacctagcattataccctgat
taccaacggcgactgatggttcttagagagttgaattacatagacgaacacgatagtgtg
attctaaaggggagagtggcttgtggaatgggtactaatgaactaataatatcggagtta
gtgttcagaaatgtgttcacggacaagacgccggcagaaatagccgcgttgctcagttgt
ttcgtgttccaagcgcgtacgcaggtcgagccgcaactgaccgagcgactcgaagaggcc
gtcaagactatagagaaaattgacgaggagttaaccagcatcgagtacaagtatatggtg
aaccaattcgagggtcaacaagagcgcctgaacttcgggctggtgcgcgtggtatacgag
tgggcgctggagaagcccttcgcggagatcatggacctcacagacgtgcaggagggcatc
atcgtacggtgcatccagcagctgcacgagttactggttgacgtaaaggatgcagctgta
gcgatcggcgacccgaaactccaggcgaagatgatggaagcatccaccgccatcaagcga
gacatagtctttgcagctagtctctacaccacacagaaggaaaccgtcgtctcctga
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