Pectinophora gossypiella (pink bollworm): 126375241
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Entry
126375241 CDS
T09293
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03008
Ribosome biogenesis in eukaryotes
pgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
126375241
09123 Folding, sorting and degradation
03018 RNA degradation
126375241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgw03021
]
126375241
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126375241
03009 Ribosome biogenesis [BR:
pgw03009
]
126375241
03016 Transfer RNA biogenesis [BR:
pgw03016
]
126375241
Transcription machinery [BR:
pgw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126375241
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
126375241
Ribosome biogenesis [BR:
pgw03009
]
Eukaryotic type
Pre-60S particles
RNases
126375241
Transfer RNA biogenesis [BR:
pgw03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
126375241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
126375241
NCBI-ProteinID:
XP_049878108
LinkDB
All DBs
Position
18:859929..894770
Genome browser
AA seq
974 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVECIEQRPTDVDGELIHADSSLPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPPPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETQEKIEEVARIRSELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIH
DRLNSDPGWRGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNKPRPCDVCGQLGHEMKECTGSTPDASLVRSDPAFGNQDNFI
FVRLSVLREYLEKELQMPNLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDR
LVNLYKKCVYKTRGWITDSGDVNLDRVQVIMDELGHVEDEIFRRRHQNELNFKARDKAKK
KQQAVNFALLEKTSFAPTAIGSTNTVKNARQEAANIRIAGMQAVAAQEETDKRNRKRSAA
AAGLDDDDDDDDKHDEVRLWEAGFKERYYESKFEVARDNMEFRYRVALQYVRGLCWVLRY
YYQGCASWKWYFPYHYAPFASDFVNICGLSTKFEKGTQPFRPLEQLMGVFPAASSQHVPK
PWATLMSDPFSPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDENRLFKALEPYYKELTQA
EIQRNIRGHDRLYVSTGNSSYSFVLGLYEAAGGEARRLVQQQQAYPFRADGVRGDVLLSA
DCVCQGGQLSSPVIGLAPVLGNRVVCVRFTDPQYPDDFIFPARRLKSAVQPPRVLKPGDL
SHQENRNWRPQIGMVRSNTVASLEAAGHRMLGHSLPRDRSYGNVPPPQHHGQHNRSHSSG
PHRSGYVPFQQQSGYQGHNQGHNQGHNQGYSQNQQSHHQNRSGYNQSGSDRFGNQGYNQN
RFGNQGYNQNRQGYNSNSQSYSSQQGYSQGQNNRGYNQNQGYNNQGQSSQGYNSNPQNRS
QQGRQSHQRGSSWR
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccagccttcttccgctggctcagccgcaaataccccagcgtaatcgtcgaa
tgtattgaacagaggccaaccgacgtagatggcgagttgatacacgcagactcttcatta
ccaaatccaaatggggtggagtttgataatttgtacctggacatgaatgggatcatccac
ccgtgtacccaccctgaagacaagccaccgccgaaggatgaggacgagatgatggtagct
atcttcgagtgcatcgacaggctgttccgcatcgtgcgcccaaggaaactgctgtacatg
gctattgatggagttgctcctcgtgcaaagatgaaccagcagcgctcccgtcgtttccga
gcctccaaggaaacccaggagaagattgaggaagtggctcgtattcgctcggaactgcag
gctaagggagcgtacttgcccccagagaggcccaaagaggcccactttgactccaactgt
attactcctggcactcccttcatggacagacttagcaagtgcttgcattactatattcat
gacaggttgaacagtgaccctgggtggcgtggcatcaaggtgatcctgtcagatgccaat
gtgcccggagagggagaacacaagatcatggactacattcgcaggcagagagcgcaaccg
gaccacgaccctaacacgcagcacgtgttgtgcggcgccgacgcagatctgatcatgtta
gggctggcgacccacgagcccaacttcaccattatccgcgaggagttcaaacccaacaag
ccgcgcccctgcgacgtctgtggacaactggggcacgagatgaaggaatgcaccggctca
acaccggacgcgtcgttggtgcggtcagacccggccttcgggaaccaggacaacttcatc
ttcgtccgtctctcggtcctcagagagtacttagaaaaggaactccagatgcccaacttg
ccgttcccgtacgacttcgaacgcgcgttggatgactgggtgttcatgtgtttcttcgtc
gggaatgacttcctgccgcatctacctagtttggagatcagggagggagctgttgatagg
ctggtcaacttgtacaagaagtgcgtgtataagacacggggttggataacagactcaggc
gacgtgaacctggaccgcgtgcaggtgataatggacgagctgggccacgtggaggacgag
atattccgccgccggcaccagaacgagctcaacttcaaggcgagagacaaagccaagaag
aagcagcaggcggtcaacttcgcgctgctcgagaagacttccttcgcgcccacggcaatc
gggagcacgaacactgtgaagaatgcgcgtcaggaggctgccaacatacgcatagccggg
atgcaggctgtagccgcgcaagaagagacagacaaacgcaaccgcaagcggtcggccgcg
gcggcgggcctggacgatgatgatgatgatgatgacaagcatgatgaggtgcgcctctgg
gaggcgggattcaaggagcgctactacgagagcaagtttgaagtggctcgcgacaatatg
gaattcaggtaccgcgtggcgctccagtacgtgcgcgggctgtgctgggtgctccgctac
tactaccagggctgcgccagttggaagtggtacttcccgtaccactacgcccccttcgcc
tcggacttcgtcaacatatgcggcctctccaccaagtttgagaagggaacgcagccgttc
cgccccctggagcagctgatgggggtgttcccggcggccagctcacagcacgtgcccaaa
ccctgggcgacgctcatgagcgacccgttctcgcccataatcgacttctacccgacggac
ttcaagatcgacttgaacggcaagaagttcgcgtggcagggcgtcgcgctgctgcccttc
gtggacgagaaccgactctttaaggcgctggagccttattacaaagagctcactcaggct
gagatccagcgcaacatccgcggccacgaccggctgtacgtgtcgacgggcaactcgagc
tactcgttcgtgctggggctgtacgaggcggcgggcggcgaggcgcggcggctggtgcag
cagcagcaggcataccccttccgcgccgacggcgtgcgcggcgacgtgctgctcagcgcc
gactgcgtgtgccagggcgggcaactttcgtccccggtgatcggcctggccccagtcctg
ggcaaccgcgtggtgtgcgtccggttcacggacccgcagtacccggatgacttcatcttc
ccggcgcggcggctcaagagcgccgtgcagccgccgcgggtgctcaaacccggggacctc
tcccaccaggagaacaggaactggaggccgcagattggtatggtgcggtcgaacacggtg
gcatcgctcgaggccgctggacaccgcatgctgggacactcactgccgcgggaccgctcg
tatggtaacgtgcctccgccccagcaccatggacagcataatcgctcccactcctctggg
cctcatcgaagcgggtacgtaccgttccaacaacaatcaggttaccagggtcacaaccag
ggtcacaaccaaggtcacaaccagggttacagccagaaccaacagtctcaccaccagaac
cgctccggctacaaccagagcggctccgacaggttcggaaaccaggggtacaaccagaac
agattcggcaaccaaggttacaaccaaaaccgacaaggatacaacagcaactctcaaagt
tacagcagtcagcaaggctacagtcaaggccagaacaacagaggttataaccagaatcag
ggttacaacaaccaaggccagagttctcagggttacaattcaaatccacagaacagatcg
cagcagggaaggcagagccaccaaagggggtcatcttggcgttga
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