Pectinophora gossypiella (pink bollworm): 126375655
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Entry
126375655 CDS
T09293
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03015
mRNA surveillance pathway
pgw03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126375655
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
126375655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126375655
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
126375655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
126375655
NCBI-ProteinID:
XP_049878659
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All DBs
Position
19:9288662..9310526
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AA seq
708 aa
AA seq
DB search
MADGGVDIDLYADDIESDFNRQDEFGGENVDLYDDVIAAPAVKPEDEDGPPNVVPQHPHP
PEETNGNSQYHNNAPNHHHGRRFQLYVGNLTWWATDQDIANAIGDIGVTDFQDVKFFENR
ANGQSKGFCVISLGSDQSLRMVMDRLPKKEIHGQHPVVTLPTKQALNQFESQSKTRSTPP
GPNNPGMRGPHPGGPPGPHPGDFFGGGPNGPGPNGPRMMMPGPGPHHQLRGPPPGPPHGP
PHHMQQHQGPPPHHMQHQGPPPHQGPPPHRPPMQFQGPPQMARVPGPGPRPEWGPRGPPH
MPQPAPQYGPPQHQMPHQMPPPHAAPPGQGMPPPHHQMPPHQGPPRGPAPPQPHPGMNGY
PGVGGAPAPHVNPAFFSQQPGPQPAPGPQPPPQQPPPGPGAPYGHPPHGAPPPAQGPPPG
ARQPYGRPPQSYPPPGEAGRAPHHAAPLGAPHPPHAPHPPHPPHPQHPPHAQHPPPHAAI
SEAEFEEVMSRNRTVSSSAIARAVSDAAAGEYASAIETLVTAISLIKQSKVAHDERCKIL
ISSLQDTLHGVETKSYNSGERSRRSRSRERDARAHHRAPRRRDRSASRYRDRSRDRDDRD
RYRERSRERDRERDRDAYYRDYRERERDRSRSRDRERAEYNRGHSRDERPRKSPVEPAAE
GGAGDASSAKSRASAAPYYDERYRERRERDPPPTDRDRDRDHRRDARH
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggaggcgtggatatagatttatacgccgacgatattgaatctgattttaat
agacaggatgagtttggtggtgagaacgtggatttgtacgacgacgtgattgctgcgcct
gcagtgaaacccgaggacgaggacggcccgccgaacgtcgtgccgcagcatccgcacccg
ccggaggagaccaacggcaactcgcaatatcacaacaacgcaccaaaccaccatcatggc
cgccggtttcagctctacgtcggcaacctcacttggtgggcgacggaccaggacattgcg
aacgccatcggagacattggcgtcaccgacttccaagacgtcaagttcttcgagaatagg
gccaatggtcagtcgaaggggttctgcgtcatttcgctcggctcggaccagtccctcagg
atggtcatggaccggctgcccaagaaagagattcacggacaacatcccgtcgtcacgctg
cctactaaacaggcgttgaaccagtttgagagtcagtcgaagacaaggtcaactccgcca
gggccgaacaaccctggcatgagagggccgcatccaggcggtccaccggggccacatcct
ggagacttcttcggaggtggtccgaatggtccaggtccgaacggcccgcgcatgatgatg
ccgggcccagggccgcaccaccagctgcgaggtcccccgccagggccgccacacgggccc
ccgcaccacatgcagcaacaccagggccccccgccacatcatatgcaacatcaagggccc
ccgccgcaccagggcccaccgccgcataggccgcccatgcaattccaagggccgccgcag
atggcgcgggtgccgggccccgggccgcggccggagtggggcccgcgcggcccgccgcac
atgccgcagcccgcgccgcagtacggcccgccgcagcaccagatgccgcaccagatgccg
ccgccgcacgccgcgccccccgggcaaggcatgccgccgccgcaccaccagatgccgccg
caccagggcccgccgcgcggcccggcgccgccgcagccgcatccaggtatgaacggctac
ccaggcgtcggcggtgctccagcgccccacgtgaacccggcgttcttcagccagcagccc
ggcccacagcccgcgcccggcccgcagcctccgccgcagcagcctccaccaggtccaggc
gcgccctacggccaccctccgcacggcgctccgccgccagcacagggcccaccgcccggc
gcccggcagccctacggaaggccaccacagagctacccgccgccgggcgaggcggggcgc
gcgccgcaccacgcggccccgctgggcgcgccgcacccgccgcacgcgccgcaccccccg
cacccgccgcacccacagcacccgccgcacgcgcagcacccgccgccgcacgccgccatc
agcgaggctgagttcgaagaggtgatgagccgcaaccgcaccgtgtcgtcgtccgctatc
gcgcgcgctgtcagcgacgcggcggccggcgagtacgcgtccgccatcgagaccctcgtc
actgctatatcgctcatcaaacagagcaaggtggcccacgacgagcgctgcaagatcctg
atctcgtccctccaggacaccctgcacggcgtggagaccaagtcgtacaacagcggcgag
cggtcgcgccgctcgcgctcgcgggagagggacgcgcgcgcgcaccaccgcgcgccgcgc
cgccgggaccgctccgccagccgctaccgcgaccgcagccgcgaccgcgacgaccgcgac
aggtacagggaacgctcaagggaacgcgaccgcgagcgtgaccgtgacgcgtactacagg
gattaccgtgagcgtgagagggaccgctccaggtcgagagaccgtgaacgtgccgagtac
aatagagggcacagtcgagatgagagaccacgcaagtccccagtagagccggcagcggag
ggaggcgcgggcgacgcgagcagcgccaagagccgcgccagcgcagcgccctactacgac
gagcggtaccgcgagcggcgcgagcgcgacccgcctcccaccgaccgggaccgcgaccgt
gaccaccgccgggacgccaggcactaa
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