Pectinophora gossypiella (pink bollworm): 126376265
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Entry
126376265 CDS
T09293
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03013
Nucleocytoplasmic transport
pgw03015
mRNA surveillance pathway
pgw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126376265
09122 Translation
03013 Nucleocytoplasmic transport
126376265
03015 mRNA surveillance pathway
126376265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126376265
03041 Spliceosome [BR:
pgw03041
]
126376265
Enzymes [BR:
pgw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126376265
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126376265
Spliceosome [BR:
pgw03041
]
Complex C
Other components
EJC/TREX
126376265
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
126376265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
126376265
NCBI-ProteinID:
XP_049879524
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All DBs
Position
20:complement(10094907..10096521)
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AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEAADQQTTEGATEAPPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMAGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDEADAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctgataacgatgatcttctggactacgaagatgaagaggcagcggatcagcaaacc
accgaaggggccacggaagcgccgcctaagaaagaggttaaaggatcctatgtatccatt
cacagttccggctttcgagatttcctactgaagccagaaatattgcgagccatcgtcgac
tgcggcttcgagcatccatcagaagtacaacatgagtgtattccgcaagctgtgttgggt
atggatattctctgccaagctaagtccggtatgggtaaaacggctgtatttgttttggcc
acactgcaacaactggaaccttctgaaaatcacgtttacgtactcgttatgtgccacaca
agagaactagcgttccaaatcagcaaagagtatgaacgattctccaagtacatggcgggc
gtcagggtgtcagtatttttcggtggtatgccaatacagaaagacgaggaagtgctgaaa
actgcgtgtccccacatcgtagttggtactcccggcaggattttggcgttagtcaacagc
aaaaaactcaacttgaaacatttgaagcactttatcctggacgagtgtgataagatgctt
gaatctctggatatgaggcgagacgttcaggaaatattcaggaacacacctcatggaaaa
caagtgatgatgttttctgctaccctgagcaaggagatcagaccagtgtgcaagaagttt
atgcaagaccctatggaagtgtatgtggatgacgaggccaagctgacactccacgggctg
caacaacattatgtaaagctcaaggagaatgagaaaaacaagaaattatttgagttgttg
gatgtgctggaatttaaccaagtggtcatttttgtgaaatcagtgcaaagatgcatagct
ctagctcagttactgactgatcagaacttcccagccatcggaattcaccgcaacatgacc
caggatgaacgtctgtcacgttaccagcagttcaaggacttccagaagaggattttggtt
gctaccaacttgtttggtcgaggcatggacattgaacgtgtgaatattgtcttcaactat
gatatgcctgaagactccgacacctacctgcatagagtggctcgtgctggacgttttggt
accaagggtttagccattaccatggtttctgatgaagcagatgcgaagatcctgaatgaa
gttcaagataggtttgatgtcaacattacggagctgcccgaggagatcgaattatctact
tacattgaaggacgatag
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