Pectinophora gossypiella (pink bollworm): 126376438
Help
Entry
126376438 CDS
T09293
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126376438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126376438
03041 Spliceosome [BR:
pgw03041
]
126376438
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126376438
Spliceosome [BR:
pgw03041
]
Complex B
Other components
Prp19-related factors
126376438
Complex C
126376438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
Mad3_BUB1_I
NRDE-2
ARM_TT21_C
DHR-2_Lobe_A
TPR_10
PPR
DUF908
Motif
Other DBs
NCBI-GeneID:
126376438
NCBI-ProteinID:
XP_049879746
LinkDB
All DBs
Position
1:6034786..6038112
Genome browser
AA seq
845 aa
AA seq
DB search
MPMLDGKEVEIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKGAPKHETNMIYERALKEL
PGSFKLWYNYLKLRRSQIRGRCITDPCYEDVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITSTRKAFDCALRALPITQHHRIWPLYLSFLKKHNITETAVRVFRRYLKLCPEDTEEYI
DYLISINKLDEAAIKLAHIVNNENFQSKHGKSNHQLWNELCELISKNPEQIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEISKKPSPSEDDDIGLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAQFYEKNDQIEDARLIFEKATQ
VNYVKVDDLASVWCEWAEMEIRHENYEDALKLMQKATVLPSRKVAYHDDTETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGYFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGTKLERARDLFEQCLEHCPPQFAKSIFLLYAKLE
EEHGLARHAMSVYERATTAVLPEEMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPEEK
SREMCIRFSEMETRLGEIDRARAIYAHCSQMCDPRITSEFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTISDLAPGMKDGMRMLEAKAAEMAVQNKG
NIMFVRGETQGLKEADKVVNPDEIDIDEESENSDEDEEDGEVAPVQKKAIPAAVFGGLVT
DDKEE
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgcctatgctcgatggaaaggaagttgaaatattttttagtgaagaagacttaccatat
gaagaagagatattgagaaaccccttctctgtaaaacactggcttcgttatatagaacat
aaaaaaggtgctcctaaacatgaaactaatatgatctacgagagagctctaaaagagcta
ccagggtccttcaaactatggtataattatttaaaactgagaagatctcaaatccgagga
cgctgtatcactgatccttgctatgaagatgtcaataattgttttgaacgctcactagtt
ttcatgcacaagatgccaagaatatggatggactattgtacattcctgactgaccaatgc
aaaataacatctacaagaaaagcttttgattgtgcattaagagctcttcctataacacaa
catcatagaatctggcccttgtacttgagtttcctgaagaaacacaacattactgaaaca
gctgttagagtttttagaagatatctgaagttgtgccctgaagatacagaagaatacatt
gactacttaatctccatcaacaaattagatgaagcagctattaaactggctcacatagtc
aacaatgaaaacttccaatccaaacatggtaaatcaaaccaccaattgtggaatgagctg
tgtgaattgatatctaagaatcctgaacaaatacactccttaaatgtagatgccatcatc
cggggaggtctgaggagatatactgaccagctgggccatttgtggaactccttagcagat
tattatgtaagaagtggtctatttgaaagagcaagagacatttatgaagaagctatacag
actgtcacaacagttagagacttcacacaagtgtttgatgcctatgctcagtttgaagaa
cttagtttgagcaagaaaatggaagagatatcgaagaaacctagtccctctgaggatgat
gatattggtcttgaacttaggcttgctagatttgagtatttaatggagagaagactacta
ctcctaaattccgtgctactgcgacaaaatccccataatgttgctgagtggcacaaaaga
gttaaactatatgaaggaaaaccacatgaaataattgacacttatacagaagctgtacaa
actgtagacccaaaactggcagttggtaaactgtatacattatgggttggttttgcacaa
ttttatgaaaaaaatgatcaaattgaagatgctagacttatttttgaaaaagcaacacag
gttaattatgttaaagttgatgatttagcatcagtctggtgcgaatgggctgaaatggaa
ataagacatgaaaattatgaggatgctctcaaattgatgcaaaaagctacagtgctgcca
agtaggaaagttgcttaccatgatgatactgaaactgtacagatgcgtttgtacaaatca
ttgaaagtttggtctatgtatgctgacttggaggaaagttttggtacttacaagtcatgc
aaagcagtttacgatcatatcattgacttaaaaattgctacaccccaaataataatcaac
tatggatacttccttgaagaacacaactattttgaagaagctttcagagcttatgaaaaa
ggtattgcacttttcaaatggcctaatgtctatgatatatggaacacatacttgacaaaa
ttcttgaaaagatatggtggaactaaattggagagagcaagagatctgtttgaacagtgc
ctagaacactgcccaccacagtttgctaaatcaattttcctactatatgcaaaattagaa
gaggaacatggtctggcaagacatgctatgtctgtctatgagcgtgctactactgctgta
ctaccagaggagatgtttgaaatgtttaatatttacataaagaaagctgctgagatttat
ggagttccaaagacgcgccaaatctacgaaaaagctattgaaactttacctgaagaaaaa
tctagagaaatgtgcattcgcttttctgaaatggaaacacgtcttggtgaaattgacaga
gctcgcgccatttatgcacattgtagtcaaatgtgtgatccaagaattacttcagaattc
tggaacacctggaaagaatttgaggtcaggcacggaaatgaagacactatgcgtgaaatg
ttaagaataaaaagaagtgtccaagcaacatacaatactcaagtaaacatgatgtctgct
caaatgttgagttctgcggcccaggctgctggtactatttcagacttagccccaggaatg
aaggatggcatgagaatgctggaggcaaaagcagcagaaatggctgttcaaaataaagga
aatattatgtttgtacgaggcgaaactcaaggtctcaaagaggcagacaaagttgtcaac
cctgatgaaattgatattgatgaagaatctgagaacagtgatgaagatgaagaagatggc
gaagttgctccagttcagaagaaagcaatccctgctgctgtatttggtggcttagttact
gacgataaagaagaataa
DBGET
integrated database retrieval system
