Pectinophora gossypiella (pink bollworm): 126377834
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Entry
126377834 CDS
T09293
Name
(RefSeq) uncharacterized protein LOC126377834 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126377834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgw03000
]
126377834
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126377834
04121 Ubiquitin system [BR:
pgw04121
]
126377834
Enzymes [BR:
pgw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126377834
Transcription factors [BR:
pgw03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
126377834
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126377834
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126377834
Ubiquitin system [BR:
pgw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126377834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-RING_2
zf-C3HC4
Baculo_IE-1
Nup35_RRM_2
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
126377834
NCBI-ProteinID:
XP_049881742
LinkDB
All DBs
Position
24:5008945..5045656
Genome browser
AA seq
921 aa
AA seq
DB search
MSVLNQSGEEQVMTTDVECPLCMEPLEVDDLHFYPCTCGYQICRFCWNRIREGENGLCPA
CRKAYPENPADFTPLSQEQVAAIKTEKKAREQKRRNKTLESRRALANVRVVQNNLVFVVG
LPVRLADPEILKRQEYFGKYGKIHKVVINQSTTYAGSQGPSASAYVTYVSPADALRAIQG
VNNVTLDGRVLKGSLGTTKYCANFMKNQPCPKPDCMYLHELGDPKASFTKEEMHAGLHQV
YERKLHNQLLASQRDSNNSSGNSSTNAEKGSSKDGNPSNFIPTTVVTSSHINVVNSSKSK
KESVNGSSGGGSGSGSSSSSGSGKDAWPSLGSSPPAASPARKHSPKPDDGKDWPSLGCEP
PSEPHRKHSPKPSTGAEVKSQENGTSESSSPTLTQQPPAKSKDDKPSRKESTNGQTSKKN
KADKSKQTKSNSINNDETDEKTFNTQTHSVFENDTQQYLSNELDELESDRHSLLENHDLL
DNSDHSLLEDDNTHNLLNDANNEVMMMQRHREMLAGLVDSNHLMPHVKSPLVNGYGLLDR
DMGYDRQINQISQGMDQKELLLRERSRSEMLMRQNELLARQHMVDPKLYMPTSSIGLEST
SELLGANFHPNPSMLPPFGMRVDNSMGNSSMTSNSIASNLGGSSMSTGSLASNMGGFMMH
NQHVMNQQPLQGGLVNGFDNPQNNSEGRYLEGNMDKFFTDFHKAQQMRLLLARGHSPDPR
YNLHNMLSAERLEMDHKQRMNNMRTDGIGHRAAGDGDDDLDFDPFKETQKALAEMMETEM
MQTTVSSGDNMERVRRARLPPPGFGPVSTFAPPPRHHHHQGFSSNSGYSDWTQMDPAIMS
TSVNFNKPAAGSSLSPHQQELFARFNHLSVQPNGVNKIQVPLVQQWANAGKLGWSYNSIP
LPPGFAPAKPGQHAAECIDAK
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgctgaatcagagcggagaagagcaggtaatgacaactgatgtggaatgtccc
ctgtgtatggagcccctggaggtggacgatctccacttctacccgtgcacatgtggatac
caaatatgccggttttgttggaatcgcatccgggaaggagagaacgggctctgcccagcg
tgtcggaaggcctacccggagaacccggcagacttcactccgctcagtcaggagcaggtg
gcagcaataaaaacggagaagaaggcccgcgagcagaagcggcggaacaagacgctggag
tcgcggcgggcgctcgccaacgtgcgcgtcgtgcagaacaacctcgtgttcgtggtcgga
ttgcccgtgcgcctcgcagaccccgagatcctcaaacggcaggagtactttggcaaatat
ggcaaaattcacaaagtagttataaaccaaagtaccacatatgcaggctcacagggtccg
tcggcgtcagcgtacgtgacgtacgtgtccccggcggacgcgctgcgggcaatccagggc
gtgaacaacgttaccctggacggccgggtcctcaagggatcgctgggcaccaccaagtac
tgcgccaacttcatgaagaaccagccctgccccaagcccgactgcatgtatctgcacgag
ctaggtgatccgaaggcgtcgttcactaaggaagagatgcacgcggggctgcaccaggtg
tacgagcggaagcttcacaaccagctgctggcctcgcagcgagactctaacaatagttca
ggtaattctagtacgaatgcagaaaagggcagttcaaaagacggcaatccatcgaacttt
ataccgacaacagtggtcacatcctctcatataaacgtagtcaattcatctaaatctaaa
aaagaatctgtgaacggcagcagtggtggcggcagcgggtcgggcagcagcagcagcagc
ggcagcggcaaggacgcgtggcccagcctcgggtcgtcgccgcccgccgccagccccgcg
cggaaacacagccccaagcccgacgacggcaaggactggcccagcctcggctgtgaaccc
cccagcgagccgcataggaaacatagtcccaaaccctctacgggtgctgaagttaaatca
caagaaaacggcacatcagaatcgtccagtcccacactcacacaacaaccccccgccaaa
agcaaagacgacaaacctagcagaaaggaaagcacaaacggacagactagcaagaaaaat
aaagccgacaaaagcaaacaaacgaaaagcaatagtattaataacgatgaaactgatgag
aaaacgttcaacacacaaacacattctgtattcgagaatgacacgcaacagtacctatcc
aacgaattagatgaactagaatccgacagacatagcttattggagaaccacgacctgtta
gataacagcgatcacagtttgttagaagacgacaacacgcataacctcctgaacgatgcc
aataatgaagtaatgatgatgcagaggcatcgagaaatgttagccgggttggtggacagc
aatcatctgatgccacacgtgaaatctccactggtgaacgggtacgggctcctagaccga
gacatggggtacgatagacagattaatcaaattagccaaggcatggaccagaaggaatta
ttgttgagagaacgtagccgcagtgaaatgttgatgcgacagaatgaattattagcccga
cagcacatggttgaccccaaactctatatgcccacttctagtataggacttgagtctact
agtgaattattaggtgctaattttcatccaaatcccagtatgcttccaccgttcggtatg
cgcgtagacaactcaatgggcaacagttctatgacgtcgaacagtatcgcgtcgaacctc
ggcggcagttctatgtcgactgggtcactcgctagtaacatgggcggtttcatgatgcac
aaccagcatgtgatgaaccagcaacccctgcagggggggctcgtcaacggattcgataac
ccacaaaataatagtgaaggccgctacctagaaggcaacatggacaagttcttcacagac
ttccacaaggcgcagcagatgaggctgctcctggccaggggacactcgcccgaccctcgc
tacaacttgcacaacatgctcagcgccgagaggctcgagatggaccacaaacaaagaatg
aacaacatgcgcacagacggcatcgggcaccgcgcggccggcgacggagacgacgacctc
gacttcgaccccttcaaggagacgcagaaggcgctcgccgagatgatggaaaccgagatg
atgcagaccaccgtctctagcggcgacaacatggagcgtgtgaggcgcgcgcggctgccg
ccgcccggcttcgggcccgtcagcaccttcgcgccgccgccgcgccaccaccaccaccaa
gggttctcctcgaacagcgggtactcagactggactcaaatggaccccgccatcatgtcg
acgtccgtcaacttcaacaagccagccgccggcagcagtctctcgccgcaccagcaggaa
ctcttcgcgaggttcaaccacctcagtgtgcagcccaacggggtcaacaaaatacaggtg
ccgctagtgcagcaatgggccaacgccggcaaactgggctggtcgtacaactcgatcccg
ctgccgcccggcttcgcgcccgccaagccgggccagcacgcggccgagtgcatcgacgcc
aagtaa
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