Pectinophora gossypiella (pink bollworm): 126380044
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Entry
126380044 CDS
T09293
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126380044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126380044
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
126380044
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
PAM2
DUF6751
Motif
Other DBs
NCBI-GeneID:
126380044
NCBI-ProteinID:
XP_049885107
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All DBs
Position
Z:complement(14887015..14908073)
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AA seq
822 aa
AA seq
DB search
MGIVPFALPFGENQNKKNVYAPFTGSLVSFFTAARWLGIHLFYFRNIVLGPVFTKMNSEL
NPEAPEFYPHLTSVTQNGYSTVNKTIKTSNLLPKQGSYELYKTFTDFNILTCQLSENVVT
QSNQIITAELPGVKLKRNDIQYNSEKLVDANDNMLDRVNINIDIVSGENQPNNKFLDGLN
IAPWNRQNNGPVIAKIQVGSTTFIGAKNIPRPQLTFKDPVDNSKSLWVPKISDKPNNIKP
LALNILYNDEGEAVGYEHPYQVELDLYQPPAEFIDPDPEPPTPPPPIQDTKLTYVETEEQ
VNELVDHLNTVKEMAVDVEHHSYRTYQGITCLIQITTNEGGDFIIDALAVREHIHKLNLA
FTDPKKIKVFHGAEMDVLWLQRDFGVYIVGLFDTHQAAKALKVSGFSLKYLLMKYCGVNA
DKKYQLADWRIRPLPNELMEYARSDTHYLLYIWRKIKADLLEAGAGQPQLLLSVFEQSRQ
ICGMTYNKEVVDDSSHMRLYMRSKKSFNSRQMSALQLLYKWRDTQARALDESTMYLLPNH
MLLALAEILPREVQGVNACCCPMPPFVKQNLITIHRMILSCRELPLEPQLYQMPSSIRTM
VNTTHQPVIYKVHDLTQTPEFRENQRINLDRAATFLEDYPGYQADIPAFVPLYDSETCYG
VVSDLNAEAKLFIPPYDRYRKYRSLAQMEEIKEYKDKEAKIAAISKGNELIKTEVLIKLQ
QAKTNVENEEHAAKDAGDVRIVEETIQVQKGEKRKRKMTADKLERKETATQIEEKVEVKN
MKNNDRSKNLKPFLYKNVNYRKFYDDSDKAHKQPKMKFKKHK
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgggcatagttccctttgccttacccttcggggaaaaccaaaacaaaaaaaatgtttat
gcgccgttcacaggttcactcgtttcgttcttcacagctgcacgttggttagggattcat
ttattttattttagaaatatagtattaggaccagtttttacaaaaatgaattcagaacta
aatccggaggctcctgaattctatccacatttaacttcagtgacacagaatggttattct
acagtgaacaagacaataaaaacatccaacttactgccaaaacaaggatcttatgaacta
tacaaaacctttacagacttcaacattttaacatgccaattaagtgaaaatgttgttaca
caatcaaatcaaataataacagcagagttgccaggtgtgaagttgaaacgtaatgacatc
caatacaattcggagaaactggttgatgctaacgataacatgttagaccgagtgaatata
aacatagacatagtgagtggagaaaaccagcccaacaacaagttcttggatggactcaat
atagcaccatggaacaggcagaacaatggtcctgtgattgctaaaatacaggtgggttcc
actacgttcataggtgccaagaatattccgcgaccgcaactcactttcaaagaccccgtc
gacaattcgaagagcttatgggtgcctaaaatatcagacaaaccaaacaatatcaagcca
ctggctttgaatatcctttataatgatgaaggcgaggctgtcggatacgaacatccatac
caagtggagttggacttataccagccaccagctgagtttattgaccccgaccctgagccc
ccaacacctccaccccccattcaagacacgaagcttacctatgtggagacagaggaacag
gttaatgagttggttgaccacctcaatactgttaaagaaatggctgttgatgtggaacac
cactcctataggacttatcaaggaataacatgtcttatacaaataactacgaacgaaggc
ggcgatttcatcatagacgcgttggcagttcgagagcacatacacaaactcaatttggca
ttcacggatccgaaaaaaattaaagtgttccacggtgccgagatggatgtgttatggctg
caaagagactttggtgtctatattgtcggtttgtttgacactcatcaagctgctaaggcc
ctgaaagtgagcggattctccctcaagtatttactcatgaaatactgtggagtgaatgcc
gataaaaagtatcagttggcggattggcgcatacgtccattgccgaacgagttgatggag
tacgcgcgcagtgacacgcattatctgctgtacatctggcgaaagatcaaagctgatctc
ttggaagcaggcgctggacagccgcaactactactgtcagtctttgaacagagtcgtcag
atatgtggcatgacatacaacaaagaagtggttgatgactcgagccacatgcgactgtac
atgcgatcgaagaagtcgttcaattcccgacagatgtccgcgctgcagttattgtacaag
tggagggacacgcaggctcgtgccctggacgaaagcacaatgtatttactgccgaaccat
atgctattggctctagccgagattttgccccgcgaggtgcaaggagtgaacgcttgttgc
tgccccatgccgccctttgtcaagcaaaacctaattaccattcatagaatgatcctttcc
tgccgcgagttaccgttggagccgcagctgtaccagatgccctcgagcatcagaaccatg
gtgaacaccacgcatcaaccggttatctacaaagtacacgacctcacgcaaacccctgaa
ttcagagaaaaccaacgcataaacttagaccgagcagcgacttttctggaagattacccg
ggataccaagctgatatccccgcgtttgtccccttatacgacagcgaaacttgctatggc
gttgtttccgatctgaacgcggaagcgaaactattcattccaccgtacgatagatatagg
aaatatcgttctttagctcagatggaagaaataaaagaatacaaagataaggaagcgaaa
atagctgctattagcaaaggaaacgagttgatcaaaaccgaggtgcttattaagctccaa
caagctaaaacgaatgtagaaaacgaagaacacgcagctaaagacgcaggagatgtcagg
attgtcgaggaaactatacaagtacaaaaaggagaaaaacggaaaagaaaaatgactgcc
gacaagttagaacgcaaggaaaccgcgacgcagattgaagaaaaagtcgaagtgaaaaat
atgaagaataatgacaggagcaagaacctaaagccgttcctttacaagaatgtaaactac
aggaagttctacgatgactctgacaaggcgcacaaacagcctaaaatgaaatttaagaaa
cataaatag
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