Pectinophora gossypiella (pink bollworm): 126381616
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Entry
126381616 CDS
T09293
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
126381616
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pgw00536
]
126381616
Glycosaminoglycan binding proteins [BR:
pgw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126381616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
126381616
NCBI-ProteinID:
XP_049887029
LinkDB
All DBs
Position
3:complement(6219496..6236239)
Genome browser
AA seq
1790 aa
AA seq
DB search
MALQMRGRFLLVLFCVLGGGTGNDNVELFDALSPLRERWPVTGVTRTRGRCQGAATAPAH
YSAYTLNENATVHQLAAGMFYNTFPEDFSIMTVVRLPETDQNPLFVLYSDAGDEQLQLVV
GELVELYYEDTRGDPPDNELLTFRVSIGDGHWHRVAVSIKGNSVSLLVDCQVRGTLPLNR
QPGSTFNLAGALVVGAQVTPDQYFEGDIELLQFSNKPDTAYEMCNTIAPDCGRLGYSYSA
VTSGSGFSQTSVNTGAERNTAHYNTPEHTERNSVVTERASTHRNYEATTTHTDLYTLNSE
DRIRQHFGRNRVRNRSDLWVAANRDLTTVRPEWQVTSSFSVNPPYPVSTDAGKYENSIFG
SFTDADEIITTPPSVAETTPPEQPESSTSRLKRGDDDEADITPLLTTETSYTPITTTEDS
DWLTHPPDTAHGNASIYDTDTYYDYGTSGMYMGPRGYPGPPGPQGPRGPKGEPGRPGAEG
LQGFPGAPGHVFVVPLHQSGNDKGPDAQSEALRQLMTQHMAAMRGAEGPMGLTGPPGPEG
EIGSEGPKGEQGEQGEPGQPGPRGPQGPAGRVGRRGHAGRDGERGATGAPGLKGEPGYPG
PPGMPGDKGERGATGLQGESGAPGQDGPAGDDGPPGPPGLVGELGPRGFMGPRGFPGLIG
YPGLPGNEGPQGAKGASGQPGPSGPQGQPGPMGPPGSTGPQGPTGVPGIQGPQGKQGISG
LPGPEGSPGTPGNPGQQGSPGEVGPQGQQGMLGFPGPRGLKGDDGPRGVPGDKGDKGIRG
IEGEKGEMGLKGERGPPGEPGPPGIEGPEGQKGTEGPRGETGSVGPAGEKGATGPQGPTG
YPGAQGEKGDKGASGRRGRRGAKGIMGLPGSPGDRGEGGPRGYRGPRGRRGSDGAPGPKG
DTGQPGSPGPIGERGPQGIEGVRGFPGAIGPPGSDGKAGLPGPPGERGPTGEPGAVGLAG
PLGPIGPQGPSGEPGPPGPQGSSGIPGTPGEIGAPGEVGKEGPPGPPGPEGKPGPVGSPG
PQGNRGEPGLPGAPGTPGTKGDFGPPGPPGLRGEKGEQGETGSEGPQGPQGRVGPRGSPG
PGGQKGEFGEPGPPGPIGRDGLPGPRGLAGAPGPVGPPGEDGDKGEAGPPGEKGFKGAAG
EPGPPGSTGIQGLRGESGPVGLPGEKGPQGDPGPPGHPGADGVRGPPGPKGPIGLQGEKG
QQGTKGETGDVGSIGPPGPTGLTGAPGKRGPKGVPGDTGPRGAEGQRGDIGNPGAPGPPG
PQGPEGKLGPRGPVGPKGEDGPPGLQGEPGPRGPKGPEGAKGDAGPAGFPGERGEPGPQG
IKGDPGADGPEGSTGPQGPPGATGPPGKAGETGLPGTPGSEGQAGTQGSPGLPGEKGDAG
PRGNPGEPGPVGPPGPTGVEGQRGIRGPPGPNGDSGAPGATGPPGPNGKIGPPGPPGPRG
DKGNRGPKGHIGDTGPMGIKGDQGEIGKQGPPGPAGPPGPKGDVGPPGVAGAKGETGPVG
PPGAEGPVGPKGSPGPEGRPGQPGPPGTPGPPGPPAPAPVLPPEMFTSYRRRRSVDENVE
STTEDIFDDEEEIEWAREIMNGVVAARTMLDAARRPRGTRANPALSCRDLRTTHTNLTDG
FYWIDARGSGAAQPIKVYCKGHHTCLFPDPRDPLAYNIDDHPPKFSQIDNGYRISYEAEG
SGFVQLRFLRLLSNGARQNFTYSCINTNAPQRADIPTVTRLNNIKLIGHNGVEFKEPQVV
KDECKEGTGEIVLEIKTSRSDRLPITDFQPIAFSEAEHQFAFTVGPVCFT
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atggctctacagatgagaggacgatttctccttgtattgttttgcgtactcggcggcgga
acagggaacgacaatgtagagctctttgacgcgttgtcgccgctgcgtgagcgctggccg
gtgacgggagtgacgcgcacgcgcggccgctgtcagggcgccgccactgcgccggcgcac
tactccgcctacaccctcaacgaaaacgccacggtgcaccagctcgctgccggcatgttc
tacaacaccttccctgaggacttctctattatgaccgtggtgagactgccagagaccgac
cagaacccgctgttcgtgctgtactcggacgcgggggacgagcagctgcaactggttgtg
ggggagctggtggagttgtactacgaggacacccggggtgacccccccgacaacgagctg
ctcaccttccgagtcagcattggcgacgggcattggcatcgagtggctgtcagcatcaag
ggcaactctgtctccttgctggtggactgccaggtccggggcaccctgccgctgaacagg
cagcccggtagcaccttcaacctcgctggggcgctcgtagtcggcgcacaggtcacgccg
gaccagtactttgagggtgacatcgaactgctacagttctcaaacaaacctgacacggca
tacgaaatgtgtaatacaatcgctcccgattgtggaagactaggatattcctactccgca
gttactagtggatctggattttcacaaacgtccgtcaatactggtgccgaaagaaatacc
gcacactacaacactcccgaacacactgaaaggaactctgtcgtgacagaacgcgcctct
actcatcggaactatgaagctaccactacacatacagacctgtacactttaaactctgaa
gatagaataagacagcatttcggaagaaatagagttcggaatcgatctgacctctgggtt
gcagcgaatagagacctgacaaccgtccgaccagagtggcaggtaacatcctccttcagt
gtcaaccctccgtacccagtatctactgacgccggtaagtacgaaaacagtatcttcgga
agctttacggatgccgacgagataataacgacacctccgagtgtcgcagagacgacccct
cctgagcagcctgaatcatccacttcgaggttgaagcgtggggacgatgacgaggcggat
attactccgctcctaaccacagagacgtcctacacccctatcacgaccacagaggactca
gattggctcacgcaccctccagacacagctcacggaaacgcttcgatatacgatacggat
acgtattacgactatgggacttcggggatgtatatgggaccccgcggatacccagggccg
cccgggcctcaggggccaagggggcctaaaggtgaaccgggaaggcccggggcggaaggc
ctccagggatttcctggtgcacctggacatgttttcgtagttccgttacatcaatcagga
aatgataaaggccctgacgcgcagtctgaagctcttcgtcagttgatgacacaacatatg
gctgcaatgagaggtgccgagggtcctatgggtctaacaggtccacctgggccagaaggt
gaaataggatctgaaggcccaaaaggggagcagggagaacaaggggaaccgggtcaacca
ggaccgcgtggtcctcagggtccagcaggtcgagttgggcgccgcggtcatgcgggcagg
gacggtgaaagaggggccacaggcgccccgggacttaaaggagagcccgggtatccaggc
ccacctggtatgcccggagacaaaggagagcgaggtgcaacaggcctacaaggggaatca
ggcgcccctggacaagatggacctgcaggagatgacggaccccccggaccaccgggactc
gttggggaacttggaccaagggggttcatgggacctagaggatttcctgggctgattgga
tatccgggattgccgggtaacgaaggaccacaaggtgccaaaggtgcttctgggcaacct
gggccttcaggaccgcaaggacaacctggacctatggggcctcctgggtctacgggacca
caaggacctacaggtgtgccgggcatacagggtcctcaaggtaaacaaggaatatcaggc
ttaccaggaccagaaggctctccgggaacacctggaaatccaggacaacaaggttctcca
ggagaagtcgggccacaaggacaacagggtatgctgggatttcctgggccacgcggattg
aagggagacgatgggccacgaggagtccctggagataagggtgataaaggaattagagga
atcgagggagaaaagggagaaatgggcctaaaaggcgagcgtggtccacccggagaacca
gggcctccaggtatcgaaggacctgaaggacaaaagggtacagagggacccagaggagaa
acaggttccgttggcccggctggagaaaagggagctacgggccctcaaggaccgacgggc
tatccgggggctcaaggcgaaaagggagataaaggagcttctggaagacgaggcagaaga
ggcgctaaaggcatcatgggcttgccaggatccccaggagatcgcggcgaaggtggacca
agaggttacagaggtcctcgaggacgtcgtggttcagacggcgccccaggtcctaaaggt
gacacgggacaaccagggtcacccggtcctataggagagcggggtcctcaaggaatagag
ggtgttcggggatttcctggagcaatcggacctccggggtccgacgggaaagcgggttta
cccggtcctccaggggaacgaggtcctacaggtgaaccaggagcggttggtctagcagga
cccctggggcctatagggccacaaggacccagtggagaaccaggtccaccggggccacaa
ggctcgtctgggatacctggtactccaggcgagattggtgctccgggagaagtcgggaaa
gaaggacccccgggcccaccggggcctgaagggaaacctggccccgtaggatctccggga
cctcaaggcaaccgcggagagccgggtttaccaggtgcacctggcacacctggaacgaaa
ggagacttcggtcctcctggtccacctgggttacgaggcgaaaagggcgagcaaggcgaa
acgggcagcgaaggaccccagggcccacaaggacgggtagggccaaggggctctccgggg
cccggagggcaaaagggagagtttggtgaacctggaccaccgggtcctattggtcgagat
ggtcttcctggtccaagaggtctagcaggtgccccagggcctgttgggccacctggtgaa
gatggcgacaagggagaagctggtccgcctggggaaaaaggctttaaaggagctgcaggg
gaaccaggacctccaggatcaacaggcattcaagggctccgaggtgaatctggaccagtc
ggtctgccaggagagaaaggaccacagggagacccaggtccccctggtcatccaggcgca
gacggagttcgaggaccccccggacccaagggacctattggccttcaaggtgaaaaagga
caacaagggacaaaaggtgaaacaggcgatgtgggttcaatagggccaccgggaccaact
ggtctgaccggtgctccaggcaaaagaggacctaaaggcgtccctggagatactggacct
cgaggtgcagagggacaacgtggagatattggcaatccaggcgcgcccggtccgcctggg
cctcaaggcccggagggaaaattgggacctagaggccccgtgggacctaaaggagaagac
ggtccacccggactacaaggcgaaccggggccaagaggtcctaaggggccggaaggagca
aaaggtgatgcaggaccagccggttttcccggggaaaggggtgaacctggtccccaaggt
ataaaaggagatccaggagcggacggccctgagggtagcacgggcccacagggaccgccc
ggtgcaactggaccaccaggtaaagctggtgaaactgggttgcctggtactccgggctca
gaaggtcaagctgggactcaaggtagccctgggttaccaggcgaaaagggggacgctggt
cctagaggaaatcctggagagccgggacctgtggggccaccgggtccgacaggagtagag
ggccaaagaggaatacgggggccgccaggacctaatggtgattctggagcaccaggtgcc
accggacccccaggccctaatggaaagattggaccgcctggtccacccgggccaagaggt
gacaaaggaaacagaggaccaaaaggtcacattggagacacggggccgatgggaattaaa
ggcgatcaaggagagatagggaaacaagggccaccaggacctgctggaccgccaggacct
aaaggagatgtgggaccgcccggcgtagcgggtgcaaaaggagaaacggggccagttgga
ccaccgggcgcggaaggtccagttggaccgaaggggtcacctggtcctgaaggcagacct
ggccaacctggtccgcccggaaccccggggcctcccgggccgccagcacccgccccagta
ctgccaccagagatgttcacatcttacagacgtcgtcggagtgttgatgaaaatgtagaa
tcaaccactgaagatatctttgatgatgaggaggaaatcgaatgggcacgcgagataatg
aacggggtggtggcggcgcggaccatgttggacgcagcgcggcgtccacgaggcacgagg
gccaatcccgctctgtcttgccgggacctccgcactacgcacactaacttgactgacggt
ttctactggatcgacgcccgcggcagtggcgcagcccagcccataaaggtgtactgcaaa
ggacaccacacgtgtctattccctgaccccagggacccactggcctacaacattgacgac
cacccgccgaagttctcacagattgacaacggctatcggatatcatacgaagctgaagga
tccggtttcgtacagcttcgattccttagactactatccaatggagcacggcaaaatttc
acttattcctgcattaacaccaacgctccgcaaagagccgacattccgactgtaacaagg
ttgaataatatcaaactcattggacataacggcgtggaatttaaagagccacaggtcgta
aaggatgagtgcaaggagggtactggagaaatagtgctggagatcaagacatcgaggagt
gacaggctgccaatcaccgacttccaacctatagccttctcagaagcggaacatcagttt
gctttcactgtagggccggtctgcttcacataa
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