Pseudanabaena galeata: OA858_17985
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Entry
OA858_17985 CDS
T09044
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgx
Pseudanabaena galeata
Pathway
pgx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OA858_17985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgx03019
]
OA858_17985
Enzymes [BR:
pgx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OA858_17985
Messenger RNA biogenesis [BR:
pgx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OA858_17985
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
RM44_endonuclase
AAA_22
DUF8086
Sacchrp_dh_NADP
NAD_binding_3
CoA_trans
Motif
Other DBs
NCBI-ProteinID:
WGS71579
LinkDB
All DBs
Position
complement(3952913..3954364)
Genome browser
AA seq
483 aa
AA seq
DB search
MSSSSITLPVKKSSVSHKSSTPIASAQGFSALGLSEQIVRAVASRGYTNPTPIQSQAIPV
VLSGLDLLAGAQTGTGKTAGFTLPILHLLSQKVVKRSATGKIPIRALILTPTRELAAQVE
ESVQTYGKHLPLTSMVIYGGVNINPQINRLRGGVEILVATPGRLLDHVQQGRLDLSQVEI
LVLDEADRMLDMGFIRDIKRILALLPKQRQNLLFSATFSNEIKAFANTLLNQPVMVEVAS
QNATADLVTQRVFPVDRDRKRDLLTHLIKTHNWYQVLVFTRTKHGADRLVKQLHQDDIVA
MAIHGNKSQAARTRALGKFKDGSLQVLVATDIAARGLDISELPHVVNYELPNVPEDYVHR
IGRTGRAGSAGEAISLVCVDERKFLSDIEKLIKRSLPQEIITGFEPDPRAKPEPIQVGQR
QKHQPRRGGHGDRNPIAKPSNSSGASKSPAKPQPRSQSGKSTSQSVSQPVRSERGDSHHN
RNR
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcctcaattacattgcctgttaagaaatcttctgtatctcacaaatcttct
acaccgatcgcctcagcacagggtttctcagcattaggtttgtctgagcaaattgtccgt
gctgtcgcatctcgcggttataccaatcccacaccaattcagtcacaagcgatccccgtc
gtcctctcaggtctcgatctattagcgggcgctcaaactggtacgggcaaaaccgcagga
ttcaccctgccaattttacatttactttctcagaaagtcgtcaagcgatcggctacgggg
aaaattccgatccgcgccctgattctcacacccacccgtgaactcgccgcccaagttgaa
gaaagcgtgcagacctatggcaaacatctacctttaacctcaatggtgatctatggtggc
gtgaatattaatccccagatcaatcgcctcagaggtggtgtcgaaatcttggtggcaacc
cccggacgcttgctcgaccatgtgcagcaggggcgattagacttgtcgcaagtggaaatc
ttggtattagatgaagccgatcgcatgttggacatgggcttcattcgggatatcaagcga
atcttggcactattaccaaaacaacgccaaaatctcttgttttcagcaactttctccaat
gagattaaagcctttgctaataccttgctcaatcagcctgtaatggtggaagtggcaagc
caaaatgctactgccgatttagtaacgcaaagagtctttcctgtcgatcgcgatcgcaag
cgggatctgctcacccatttaatcaagactcacaattggtatcaggtattggtgtttacc
cgcaccaaacatggagccgatcgcctagtcaagcaattgcaccaagatgacattgtggcg
atggcaattcatggcaataagagccaagccgctcgtactcgcgcccttggcaaatttaaa
gatggcagtttgcaagtcttagttgcaacggatatcgccgcacgaggtttggatattagc
gaactgccccatgtggttaactacgagttgccaaatgtgccagaggactatgtccatcgg
atcggacgcacaggacgtgctggctctgcgggtgaagctatttcactcgtatgtgtggat
gagcgcaagtttctgtcagatatcgagaaactgatcaagcgatcgctacctcaagaaatc
attactggtttcgagcctgatccccgcgctaagcctgaaccaatccaagttggacagcga
caaaagcatcagcctcgacggggtggacatggcgatcgtaatccaattgcaaaaccatcg
aattcgtctggggctagtaaatctcctgctaagccacaaccaagaagtcaatcaggcaaa
agcacctctcaatctgtgtctcaaccagtaagatctgagcgtggagactcacatcacaac
cgtaatcggtag
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