Pseudanabaena galeata: OA858_25085
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Entry
OA858_25085 CDS
T09044
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgx
Pseudanabaena galeata
Pathway
pgx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OA858_25085 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgx03400
]
OA858_25085 (mfd)
Enzymes [BR:
pgx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OA858_25085 (mfd)
DNA repair and recombination proteins [BR:
pgx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OA858_25085 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
Cas3-like_C_2
UB2H
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WGS75087
LinkDB
All DBs
Position
pPg_03:90843..94181
Genome browser
AA seq
1112 aa
AA seq
DB search
MTFTAVLENIARSLIATKIGEKLKTAKSISLSGLSCLGKGLISTHLCQQQTKPLLIVTAT
VEEATRWALQLQSMSWRVYLYPPLDTFPYEPAQIDLETAWTRIEILAELLAKPQHNLAIA
TTINALQPHLPSTQVFQKHSLYLNIGDSQSVKLLASALARLGYEEVKEVKESKQWSRKGF
SFEVFPVNRNQPVRLSCNRGTVEKIREFDPTNPKSFTDLSSIAIAPVDLHEFVAHKATLL
NYLPKNFVIALDEPEQCQSYGDRWYEAADELYKNQDPQLATSKLHWDFAKCMTEAKKFQM
LQLTERSLKPKANIFDFASSSIPIVPHQFDQMASLIRDYLKSEYQVTLISAQPLRVATLL
KEYDCIANFVSNPDDLQSIARIQKAGKPIILKYSGLMEMQGFVLPCCKMALLTDRELFGQ
QLLASPTFVHPSRMNTAKSVNPDELNVGDYVVHRKYGIGKFTRFETIEVKGEKQPHYIVE
FADGKTAVAIAQENEKILSRYRSASNKPPKLNSIANTKVWDNALNKCQKEIYKLARDLLQ
LYVRRANLVGYAFPTDTDWQQEMEDSFPYQLTPDQVKAVQDVKQDMESDRPMDRLVCGDV
GFGKTEVAVRAIFKAVCAGKQVALLAPTTILAQQHFHTLQTRFTAYPFTVEIVNRFRPAK
ERKQVLQEVADGKVHIIVGTHQLLSKDVEFHDLGLLVIDEEQRFGTVQKEKIKAMKGDVD
LLTLSATPIPRTLYAALSGVREMSVIATPPPSRRSIQTHLSAYDASLVKTAIRHELDRGG
QVFYVVPRIEGIEAIAVSLKAMLPNVRLAIAHGQMQESELESAMVAFNNNDADILLCTTI
IESGLDIPRVNTILIEDAHKLGLAQLYQLRGRVGRAGIQAHAYLLYPPNLELTDAAKRRL
DAIQEFSQLGSGYQLAMRDMEIRGLGDLLGEEQSGQADVIGFALYMDLLQEYINELRGKI
LPEVADTELQLPRLVAFIPDSYIEDKETKINAYLTLAKVKSKEEILKLAAVWEGLYGALP
EETQVLLRVMELKLVARKVGVFRIYASEDGRDLFLDSKLTDSLWELLHAKIPIEFYYRFS
FEKGRIKITSLALLPGDKQVHFLIEWLGCFLK
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcacagcagtcctagagaacatcgcccgatcgctaatcgccacaaaaataggc
gagaaactcaaaacagccaaaagcatatccctatcaggactatcctgcttaggcaaagga
ctaattagcacccacctatgtcaacaacaaaccaaaccattactcattgtcaccgccacc
gtcgaagaagccacccgatgggctttacaactccagtcaatgtcatggcgcgtctatcta
taccctccccttgatacatttccctacgaaccagcccaaatcgatttagaaaccgcttgg
acaaggattgagatattagcggaattgcttgctaaaccacagcataacttagcgatcgct
accaccattaacgcgctacagccccatctaccatccactcaagtcttccaaaaacatagt
ctctatctcaatatcggcgattcgcaatcggttaaattactagcttctgctttggcaaga
ttaggatatgaagaagtcaaagaagtaaaagaatcaaaacaatggagccgcaaaggattc
agttttgaagtgtttccagttaatcgaaatcaacccgtgcgcctaagctgtaatcgcggt
actgtcgagaaaatcagagaatttgaccccactaatcccaaaagctttactgacctatct
agcattgcgatcgcccctgtcgatttgcatgagtttgttgctcataaagctacattgcta
aattatttaccaaaaaacttcgttatcgctcttgatgaacccgaacaatgccagagctat
ggcgatcgctggtacgaggcggcggatgaactttataaaaatcaagatcctcaattagct
acatccaaactgcattgggactttgctaagtgcatgactgaggcgaagaagtttcagatg
cttcagcttaccgagcgatcgcttaaacccaaagccaatatttttgactttgccagttcc
tctattcccatagttccccatcagtttgaccagatggcatcgctcattcgcgactatctc
aaatcggaatatcaagtcaccctaatttcggctcaacctttgcgagtggcaactttgctc
aaggagtatgactgcattgctaattttgtcagtaatcctgatgatttacagtcaattgca
cgaattcagaaagctggtaaacccatcattttaaagtattcgggactgatggagatgcaa
ggctttgttttgccttgttgcaagatggcgctcttgaccgatcgcgaattatttggacag
caattactagcatcgccaacctttgtgcatccctcacggatgaatacagctaaatcagtt
aatcctgacgagctaaatgtgggcgattatgtcgtgcatcgtaaatatgggattggtaag
tttacgcgctttgaaaccattgaagtgaaaggagaaaagcaaccgcattacatcgttgag
tttgctgatggtaaaactgcggtggcgatcgcgcaggaaaatgagaagattctctcccgc
tatcgcagtgcttctaataagccgcccaagttaaatagcatcgccaatacaaaggtttgg
gataacgcactgaacaagtgtcaaaaggaaatttacaagttagcaagggatttactacaa
ctctatgtccgccgtgctaatttagtcggctatgcttttccaaccgataccgattggcaa
caggagatggaagattcttttccctatcaactcacacccgatcaggtcaaggctgttcag
gatgtgaagcaagatatggaaagcgatcgcccaatggatcggctggtttgcggtgatgtc
ggctttggtaaaacagaggtggcggtaagggcaatttttaaggcggtttgtgcgggtaaa
caagtggctctgttagctccgacgacgattctggcgcaacagcattttcatacgctccaa
actcgttttacggcttatcccttcactgtggagatcgtgaatcggtttcgccctgcgaag
gagcgcaagcaggttttacaagaggttgcggatgggaaagttcacatcattgtcggtacg
catcaacttttatctaaggatgttgagtttcacgatctgggtttgctagtaattgatgag
gaacaacgctttggcacggtgcagaaagagaaaatcaaggcgatgaagggggatgtagat
ttgttgactttgagtgctacgccgattccgcgtactctctatgcggcgctttctggggtg
cgggaaatgagtgtgattgcgactcctcctccctcaaggcgatcgattcaaacccatttg
tctgcctatgatgcgtcactggtgaaaacggcgattcgtcatgagttagatcgtggtggt
caggtattttatgttgtgccgcgcattgaggggattgaggcgatcgctgtttctttgaaa
gcaatgttaccgaatgtgagattagcgatcgcgcatggacagatgcaggaatcggagtta
gagtcggcgatggttgcttttaataacaatgatgcggatattctcctctgtacgacgatt
attgagtcaggtttggatattccccgtgtgaatacgattttgattgaggatgctcataag
ttgggtttggcgcaactttatcaattgcgtggtcgcgttggtcgggctgggattcaggct
catgcttatttactgtatccgcctaaccttgagttgacggatgcggcgaagaggagattg
gatgcaattcaggaatttagtcagcttggttcgggatatcaactggcgatgcgcgatatg
gagattcgtgggttgggggatctcttgggtgaggagcagtcgggtcaggcggatgtgatt
ggctttgcgctgtacatggatttgcttcaagaatatattaatgagttgcgggggaagatt
ttgcctgaagttgcggatactgagcttcagttgccgcgtttggttgcctttattcctgat
agttatatcgaagataaggagacgaagattaatgcttatttgactttggcgaaggtgaag
tcaaaggaagagattctcaagttggctgcggtttgggaggggttgtatggggctttgcct
gaagaaactcaggtattgctcagggtgatggaattgaagctggtggcgcggaaggttggg
gtgtttcgcatttatgcgtcagaggatgggcgcgatctgtttctggactcgaagctgacg
gattcgctttgggagttgcttcacgcaaagatcccgattgagttctattatcgtttctct
tttgagaaggggagaattaagatcacgagtctggctctcctgcctggggataagcaagta
catttcttgattgagtggttgggctgttttttgaagtga
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