Pseudomonas glycinae: AWU82_20360
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Entry
AWU82_20360 CDS
T06994
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pgy
Pseudomonas glycinae
Pathway
pgy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AWU82_20360 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgy03400
]
AWU82_20360 (recB)
Enzymes [BR:
pgy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AWU82_20360 (recB)
DNA repair and recombination proteins [BR:
pgy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AWU82_20360 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AMQ85567
LinkDB
All DBs
Position
complement(4315606..4319295)
Genome browser
AA seq
1229 aa
AA seq
DB search
MSNQPPLALAFPLKGSQLIEASAGTGKTFTISALYLRLILGHGGEASGFGRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFRDETPPPDALINELRAQFDPQQWPGCANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMQGD
ALSWVRSHWGGPAALLPRVRGLFGTEREGDSDNTPSELIEECLKERRAALVDLKRPWRQW
ADELLAICHQGVANKTVDGRKMQARYFEPWFEKLKAWAEDESLEQLDIGTGFARLTPDGM
AEAWKGEPPSHPGLDAMPVLKSSLDNLPTPDAAVLQHAAKWVGARFEDEKRRRAEMGFDD
MLLRLDAALQSDGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRIEEDNPETGLF
LIGDPKQAIYAFRGADIYTYLRARQATTGRLHTLGTNFRSSHGMVCAVNHVFERAESREQ
GRGAFLFREKNGDNPVPFQPVEAQGRKEHLQVSGLDVPALNIWHLSTDKPLSGAVYRQQL
AAACASQITSLLNGGQTGRAGFAQEGKDWRGLRPADIAILVRDGKEAQAVRGELAVRGVR
SVYLSDKDSVFAAQEAHDLLSWLKACAEPDVERSLKAALACITLNLPLAELERLNQDERV
WETRVMQFRGYRELWRKQGVLPMLRRLLHDFQLPQMLIARSDGERVLTNLLHLSELLQQA
ASELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSAKPVDGSRLPLHYHDESGKARISLKPDAELIALADNERLAEDLRLLYVALTRAQHACW
LGVTDLKRGNHSSSVLHLSALGYLLGGGATLNESSGLARWLDDLQQDCSALSVVEMPEAT
SEVYKPPRNEAKLRATLLPSRRASENWWIASYSALRISDVLSVGNDEAPDSPQAQKLFDD
ERLDPEAQREIITGGADIHRFPRGPNPGTFLHGLLEWAGEEGFAVTRESLNDAIARRCNR
RGWEGWITTLGDWLQHLLKLPLPAGHDQPPVVLEQLKQYRVEMEFWFASHKVDVLKLDEQ
VRQFTHNGVARVGAEAVQLNGMFKGFIDLTFEHEGRYYVADYKSNWLGVDDAAYTERAME
QSILENRYDLQYVLYLLALHRQLKARLADYDYDRHIGGALYLFLRGTRSPGGGVYFARPP
RELIERLDLMFQGKPQPKAEPAWEQGELL
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaccagccgccactcgccctggcattcccgttaaagggcagccaactgattgaa
gccagtgcaggcactggcaagacgtttaccatttcggcgttgtatttgcggttgatcctt
ggccacggaggcgaggcgagtggtttcggtcgtgagctgttgcccccgcaaattctcgtg
gtgaccttcaccgacgcggccaccaaagagctgcgcgaacgcatccgtacgcgtttggcc
gaagccgcccgtttcttccgcgacgagacgcctccccctgatgcgttgatcaatgaactg
cgtgcacagttcgatccgcaacaatggcccggttgtgccaaccgcctggacatcgccgcg
caatggatggatgaagctgcggtctcgacaatccacagttggtgtcagcgaatgctgcgc
gagcatgcgttcgacagcggcagtctgtttacccagacccttgaaaccgatcacagcgac
ttgctcggcgaagtgctgcgcgattattggcggctgttctgctatccgatgcagggcgat
gcattgagctgggttcgcagtcactggggaggtccggcggccttgttgccgcgtgtgcgt
gggctgtttggcaccgagcgcgagggggattcagacaatacgccatccgaactgatcgaa
gagtgcctgaaggaacgtcgtgcggcgttggtggacttgaagcgaccatggcggcagtgg
gccgatgagttgctcgccatctgccatcagggcgtcgccaacaaaaccgtggacgggcgc
aagatgcaggcccgctatttcgaaccctggttcgaaaagctcaaggcctgggccgaggac
gagtcgctcgaacaactggatatcggcaccgggttcgcccggctcacgccggacggcatg
gctgaagcctggaaaggcgagccgccgagtcacccgggcctggatgccatgcctgtgctc
aagtcgagcctcgacaatttgccgacgcccgatgcggccgtgctgcagcatgctgccaaa
tgggtcggtgcccgctttgaagacgagaagcgccgtcgagccgaaatgggtttcgacgac
atgctgttgcgtcttgatgcggccctgcaatccgacggtggggaacggctcgccacgctc
atccgcgagcagttcccggtcgcactgatcgatgagttccaggacacggacccggtgcag
taccggatcttcgaaagcatctatcgcattgaagaagataaccccgagaccgggctgttc
ctgattggcgaccccaagcaggcgatctatgccttccgtggcgcggacatctacacctat
ctgcgagcccggcaggccacaaccgggcgcctgcataccctgggcaccaacttccgttcc
agtcacgggatggtctgtgcggtcaaccatgtgttcgagcgtgcagaatcccgtgagcaa
ggacgcggagcgtttctgttccgagagaaaaacggcgataaccctgtgccgttccagcct
gtggaggctcaggggcgcaaagaacatttgcaggtctccgggctggatgtgccggcgctg
aacatctggcatttatccaccgacaaaccactgtccggggcggtttaccgccagcagttg
gcggccgcctgtgccagtcagatcacctccctgctcaatggcggacagaccggtcgcgcc
gggtttgcgcaggagggcaaggattggcgtgggctgcggccagcggacattgcgatcctg
gtgcgcgatggtaaagaggcgcaggcggtacgcggtgagctcgcagtgcgcggagtccgc
agcgtttatctgtcggacaaggactcggtctttgccgctcaggaagcccatgatctgctg
tcgtggctcaaggcgtgcgccgagccggatgtcgaacgctccctgaaagcggcgctggcg
tgcatcacactgaatctgccactggctgagctggagcgtctgaatcaggacgaacgggtc
tgggaaacccgggtcatgcagttccgcggttatcgtgagctctggcgcaagcaaggggtg
ttgccgatgttgcggcgcctgctgcacgactttcaactgccgcagatgctcattgcccgc
agtgatggcgagcgggtgctgaccaacctgttgcacctgtcggagttgttgcaacaggcc
gcgtcggaactcgatggcgagcaggcactgatccgtcatctggccgagcatctggcgctc
tccgggcaggcaggcgaagagcagatcctgcgtcttgaaagcgacgaacaactggtcaag
gtcgtgaccattcacaagtccaagggacttgaatacccgttggtgttcctgcctttcatc
tgctcggccaaacccgtggatggcagtcgattgccgctgcattaccacgatgagtccggc
aaggcccgcatcagtctgaaacccgacgccgaattgatcgccctggcggacaacgagcgc
ctggcggaggatctgcgtttgctctacgtcgcgctgacccgcgcacaacacgcgtgctgg
ctcggagtcacggatctcaagcgcggcaaccacagcagctcggtgctgcatctttctgcg
ctgggctatctgttgggcggtggcgcaacgttgaatgagtccagcggattggcccgctgg
ctggacgatctgcaacaggattgctcggcgctgagcgttgttgaaatgccggaggctacc
agcgaggtgtacaagcccccgcgtaacgaggccaagctacgcgccacactattgccgagc
cgcagggccagcgaaaactggtggatcgcatcgtacagcgccttgcgcatcagtgacgtg
ctgagcgtcggcaatgacgaagctcctgacagtccgcaagcgcaaaaactgttcgacgac
gaacgcctcgatcccgaggcacagcgcgagatcatcactggcggggccgatattcaccgc
ttcccccgcggaccgaatccgggaacgtttcttcacggtttgctggagtgggcaggggag
gagggtttcgcggtcacccgcgagtcgttgaatgatgcgattgcccgacgctgcaaccgt
cggggctgggaaggctggatcaccaccctcggcgactggttgcaacacttgctcaaactg
ccgctgcctgcagggcatgatcaaccgccggtcgttctcgagcaattgaagcagtatcgg
gtcgagatggagttctggttcgccagccacaaagtcgacgtcctcaagcttgacgaacag
gtgcgtcagttcacccacaacggcgttgctcgggttggcgcagaagcggtgcaactcaac
ggcatgttcaaaggctttatcgacctgacgttcgaacacgagggtcgttattacgtggcc
gattacaaatccaactggctgggtgtcgatgacgcggcgtacaccgaacgggccatggag
caatcgatcctcgaaaaccgttacgacctgcaatacgtgctgtacctgttggcactgcat
cgtcagctcaaggcgcggcttgccgattacgactacgaccggcatatcggtggcgcgttg
tatctgttcctgcgcgggacacggtcccctggaggcggcgtttacttcgcgaggccacca
agggagctgatcgaacgtctggatctcatgttccagggcaaaccgcaacccaaggccgag
cccgcgtgggaacagggagaactgctatga
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integrated database retrieval system
