Pseudomonas glycinae: AWU82_23485
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Entry
AWU82_23485 CDS
T06994
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pgy
Pseudomonas glycinae
Brite
KEGG Orthology (KO) [BR:
pgy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgy03019
]
AWU82_23485 (hrpA)
Enzymes [BR:
pgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AWU82_23485 (hrpA)
Messenger RNA biogenesis [BR:
pgy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AWU82_23485 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
T2SSE
NACHT
ABC_tran
AAA_30
SLFN-g3_helicase
Zeta_toxin
Nup88
Motif
Other DBs
NCBI-ProteinID:
AMQ86164
LinkDB
All DBs
Position
complement(4366802..4370713)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLVQWVARMQASCDQVLARK
ASLPVIRYDDSLPIAAKRDEIKKALEKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELGTPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSRHFDDAP
IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDLQLSLNKEPADYPKLHKAVLVGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWVMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREGLVRGEIQSRAKCLTANKQLLEQLDEL
EAKARRRDILADEETLFGFYDARLPAEIHQTATFDSWYRVNSQKDPQLLIMREEDVLARE
ASEVTAQHYPDTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGLI
EAKCIALVRNLPKALRKNFVPVPDFIKAALQRMTFAEGSLPQALGRELLRMTGARVSDEA
WAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQSAKSQQPVE
AKVFAPVAEKTQQKIAGLSMTVYPALVEEGGTVKEGRFSTPAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLLYRELGRVDALVEDILLASLDSCILEGEDPLPRDGAGLAAL
AERKRGSWTEHAERVARLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPMLWLKELPRYLKAVEQRFEKLGAQVQKDRVWSGELAGLWTQYQTRAAKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWTQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaatcgccctccatcgacaaactgctgaaaaacctcgatcacgccatgctc
gccgaccgccaccggctgcggcggcagttgcttgagctgcgcaagaaacccgacgaagcc
aaactggtccagtgggtggcgcggatgcaggcgtcctgcgatcaggtgctggcgcgcaag
gccagcctgccggtgatccgttacgacgacagcctgccgattgcggccaagcgtgacgaa
atcaagaaggccctggaaaagcatcaggtgctgatcatcgccggcgaaaccggctcgggt
aaaaccacccagttgccgaaaatctgtctggagatcggtcgcggccagcatggcttgatc
ggccacacccagcctcggcgaattgctgcgcgcagtgtggccagtcgggtcgccgaagaa
ctcggtacgccgctgggcgcgctggtcggctatcaggtgcgcttcgaagaccagagtgat
tccaacaccctgatcaaactgatgaccgacggcatcctgctggcggaaacccagaacgat
cgctacctcgaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctcaac
atcgacttcctgctcggttacctgaaaaccctgctgccgcgtcgtccggatctgaaagtc
atcatcacctcggcgaccatcgatctggagcgtttctccaggcatttcgacgatgcgccg
attgtcgaagtgtctggccgtactttcccggtggacacctggtatcgcccgctgacgctt
gagcaggacgaagagggcaaccgtgtcgaagacgacctgactgtcgatcaggcgatcctc
gctactctcgacgaaatcgccgcctatgagcgcagcgagcgccgcagtcccggtgatgtg
ctggtgttcctgcccggcgagcgtgagatccgcgacgccgccgacatgctgcgcaaggcc
cagctcaaacacaccgaaatcctgccgttgtacgcgcgcctgtcgccggctgaacagcag
cggattttccagtcgcatccgggccgtcgcgtggtgctggcaaccaacgtcgccgaaacc
tcgctgaccgtgccgggcatccgttacgtgatcgacagcggcaccgcgcgcatcagtcgc
tacagctaccgcgccaaggttcagcggctgccgatcgaagcgatttcccaggccagcgcc
aaccagcgtaaaggtcgctgcggccgggtcgagccgggtatttgtgtgcgcttgtacagc
gaagaggatttcctcggtcgcccggaatttaccgatccggaaatcctgcgtaccaacctc
gcggcggtaattttgcagatgctccatctgcgcctcggcgagatcaccgatttcccgttc
atcgagccgccggacggcaaggcgatcagcgatggtttcaacctgctgcaagaactctcg
gcggtggatcgcaacagccagctgaccccgctcggccgccagctggcgcgcctgccggtg
gacccgcgcatgggccgcatgctgctggaagcggcaaaactcggcagcctgcaggaagtg
ctgatcgtcgccagcgccatgtcgattcaggacccgcgcgagcgtccgccggagcgtcag
caagccgctgatcaggcccacgcgcagtggaaggacgccgattcggacttcgccgggctg
gtcaatctgtggcgtggcttcgaagaacagcgccaagcgttgaccgccagtccgctgcgc
aattggtgccggaagaatttcctcaattatctgcgcctgcgcgagtggcgtgattcccac
cgtcagttgagcctgatctgtcgcgacttgcagctgagcctgaacaaagagccagcggat
tatccgaagctgcacaaagcggtgctggtcggcctgctcagccagatcggccagaaaacc
gaggacggcgactatcttggcgcccgtcagcggcggttctggattcacccgtcgtcaggc
ataggcaagaaacgcccgcagtgggtgatgaccgccgaactggtggaaaccaccaagctc
tacgcgcggatggtggcgaagatcgacgccgactggatcgagccgctggccgggcacctg
atcaagaagaaccacttcgaacctcactgggagaagaagcgcggccaggtcgtggcgttc
gagcagatcaccctgttcggcctgatcgtggtcggtcgccggccagtgcattacggcccg
gtggatcccgtggtttcgcgggagctgttcatccgcgaaggtctggtgcggggcgagatt
cagtcccgggccaagtgcctgaccgccaacaagcaattgctcgaacagctcgacgaactg
gaagccaaggcccgtcgccgggacattctggccgacgaggaaaccctcttcgggttctac
gacgcgcgactgccggcggagattcaccagaccgcgacgttcgatagctggtatcgggtc
aacagccagaaagatccgcaactgctgatcatgcgcgaggaagacgtgctggcccgcgaa
gccagcgaagtcaccgcccagcattatccggacacgctgcacatcggcgatctggaactg
gctctgagttatcacttcgaaccgaatcacccgcgcgacggtgtgaccctgcgtgtgccg
gcgccgctgttgccgatgctgccgccggagcgcctggagtggctggtgccggggctgatc
gaagccaaatgcattgcgctggtgcgcaacctgcccaaggcattgcgcaaaaacttcgtg
ccggtgccggacttcatcaaggccgcgctgcaacgcatgacctttgccgaaggttcgttg
ccgcaagcgctgggccgtgaactgctgcgcatgaccggtgcgcgggtcagcgatgaggct
tgggccgaagcggcgcagcaggttgaaagccacctgcggatgaacctggaaatcgtcgac
ggccaaggcaagttcctaggcgaaggccgggatctggccgagctgaccgcacgtttcgcc
gaagccagccaggctgcgttggccgtgccgcaaagtgcgaaaagtcagcaaccggtggag
gccaaggtcttcgcgccggtggcggaaaagactcagcagaagatcgccgggctgtcgatg
acggtctatccggcgttggtggaagagggcggcacggtcaaggaagggcgcttctcgacg
ccggccgaagctgaattccagcaccgccgcgccttgcaacgcctgctgatgcaacaactg
gcggaaccggccaagttcctgcgcggcaagttgccgggcctgaccgaactgggtttgctg
taccgcgagctgggtcgggtcgatgcgctggtcgaagacattctgctggccagcctcgac
agctgcattctcgagggcgaagacccgttgccgcgtgacggcgcaggtctggcggcgctg
gccgagcgcaagcgcggcagctggaccgaacacgccgagcgcgtggcacggctgacgctg
gaaatcctcaagctctggcacggtctgcaaaaacgcttcaagggcaagatcgatctggct
caggccgtggcgcttaacgacatcaagcagcagctcagccatctggtgtatccgggcttc
gtccgggaaacgccgatgctctggctcaaggagttaccgcgctatctgaaagcggtcgag
cagcgtttcgagaagctgggcgcgcaggtgcagaaggatcgggtctggagcggcgaactc
gccgggctctggacgcaataccagacccgcgccgccaaacatgctcaggaaggcaaacgc
gatccgcaactcgagctgtatcgctggtggctggaggagtatcgggtttcgctgttcgcc
cagcagttggggacgaaagtgccgatctccgacaagcggctgaacaaacaatggacgcag
gtcgaaccctag
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