Pseudomonas glycinae: AWU82_23960
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Entry
AWU82_23960 CDS
T06994
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pgy
Pseudomonas glycinae
Pathway
pgy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWU82_23960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgy03019
]
AWU82_23960
03009 Ribosome biogenesis [BR:
pgy03009
]
AWU82_23960
Enzymes [BR:
pgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWU82_23960
Messenger RNA biogenesis [BR:
pgy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWU82_23960
Ribosome biogenesis [BR:
pgy03009
]
Prokaryotic type
rRNA helicases
AWU82_23960
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
AMQ86258
UniProt:
A0ABM5ZSJ2
LinkDB
All DBs
Position
complement(89211..90884)
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AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLQTVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatc
ctcgccggtcacgatatgattggtcaggcgcaaaccggtaccggtaaaaccgctgccttt
gccctgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaactcgtgagttggcgctacaagttgcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtgactgttgtggctgtctacggcggcgcgccgatgggcccacaattgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtactgcagaccgtgaaccacctggttctcgacgaagcagacgaa
atgctcaaactgggcttcatggacgacctcgaagtgatcttcaaggccatgccggagacc
cgtcagaccgtattgttctcggcgaccctgccgcaatcgatccgtgccatcgccgagcgt
cacctgcgcgatccaaagcacgttaagatccagagcaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacttctgccgttctcagcttgctg
gaagtggaagatttcgacgctctgatcatgttcgtgcgcaccaagcaagcgaccctggat
ctggccagcgccctcgacgccaaaggctacaaagccgccgcgttgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgccgcccgtggtctggacgttccgcgcatcacccacgtgttcaacgtg
gacatgccgtacgatccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgcgcgctgctgctggtgacgccgcgtgagcgccgcatgctgcaggtaatc
gagcgtgtgaccggtcagaaagttgccgaagtgcgtctgccggacgcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctgtcgccgctggtggctgacgccgaatcg
actcacggtgatctgctggatcgcctgactgccgacatcggttgcaccccgcgtgccctg
gctgccgctctgctgcgcaaggccaccaatggtcaggcgctgaacctggcagcgatcgag
aaggaacgcccactggtgccgaacagcgcaccgcgtggcgaccgtcctgagcgttccggt
gatcgtccggaccgtggtgatcgtgagcgtcgtgcaccgatgccgctgggcgaaggccgt
gcccgttgccgtaccgcgctgggcgcgcgtgacggtatcgcggcgaaaaacctgctgggc
gccatcctcaacgaaggtggtctggcacgtgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagatggtctggacaaactcctgaccaaactgaag
gacactcgcgttgccggtaagcagctgaaactgcgtcgctaccgcgaggattga
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