Mixta gaviniae: C2E15_01265
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Entry
C2E15_01265 CDS
T05418
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pgz
Mixta gaviniae
Brite
KEGG Orthology (KO) [BR:
pgz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pgz03016
]
C2E15_01265
Enzymes [BR:
pgz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C2E15_01265
Transfer RNA biogenesis [BR:
pgz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C2E15_01265
Prokaryotic type
tRNA splicing ligases
C2E15_01265
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
DUF7919
Motif
Other DBs
NCBI-ProteinID:
AUX91859
UniProt:
A0A1X1DZM3
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All DBs
Position
complement(294589..295812)
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AA seq
407 aa
AA seq
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MKSQYQLLAAANSAPVKMWTQGVPVEPEARQQLLDTAKMPFIFKHLAVMPDVHLGKGSTI
GSVIPTQGAIIPAAVGVDIGCGMMAVRTSLVASDLPENLYGVRSAIERAVPHGRTSNRSG
NDKGAWQRAPGSVDQHWAALQAGFKRITDKYPALLKTNNYAHLGTLGTGNHFIELCLDEA
DRVWVMLHSGSRGVGNAIGTLFINLAQQDMRQHIANLPDRNLAYFEEGSRHFADYMNAVG
WAQDYARHNREIMMQHVLAALKQSISKPFSATAEAVNCHHNYVQREQHFGESVLVTRKGA
VSAQRGQLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRAMSRTAAKKRFTVADQQRAT
AHVECRKDSDVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgcaatatcaattattagccgccgccaacagcgcgccggtgaaaatgtggacc
cagggcgtacccgtggaaccggaagcgcgccagcagctgctggatacggcaaagatgccg
tttatctttaaacatctggcggtgatgcccgacgtacatctggggaaaggctccaccatc
ggcagcgttatcccgacacagggggcgatcattccggcggcggtgggcgtcgatatcggc
tgcggcatgatggcagtgcgtacctcgctggtcgccagcgatctgccggaaaatctctac
ggcgtccgcagcgcgattgaacgcgcagtgccgcacggacgcaccagcaaccgctccggc
aacgataaaggggcctggcagcgcgcgcccggaagcgttgatcagcactgggccgccctg
caggcgggctttaagcgcattaccgataaatacccggcgctgctgaaaaccaataactac
gcgcatctcggcacgctgggcaccggcaaccattttattgagctgtgcctggacgaggcg
gatcgcgtctgggtgatgctacacagcggatcgcgcggcgtcggcaatgccatcggcaca
ctgtttatcaacctggcgcagcaggatatgcggcagcatatcgccaacctgccggatcgc
aatctggcctatttcgaagagggcagccgccattttgccgactatatgaacgcggtgggc
tgggcgcaggattatgcgcgccataaccgcgagataatgatgcagcacgtactggcggcg
ctgaagcagagcatcagcaaaccctttagcgccacggcggaggcggtgaattgccaccac
aactatgtgcagcgcgagcagcatttcggcgaatcggtgctggtgacgcgcaaaggcgcg
gtttcggcgcagcgcggccagctgggcattattcccggttcaatgggggcgaaaagtttc
atcgtgcgcgggttgggcaatgaagagagcttctgctcatgcagccacggcgccgggcgc
gccatgagccgcaccgccgcgaaaaaacgctttaccgtcgccgatcagcagcgggcgaca
gcgcacgttgaatgccgcaaagacagcgacgtgattgatgaaataccgatggcttataaa
gatatcgacgcagtgatggcggcgcagtcgtcgctggtggagatcgtgcataccctgcgt
caggtggtgtgcgtaaaaggataa
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