Mixta gaviniae: C2E15_02790
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Entry
C2E15_02790 CDS
T05418
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pgz
Mixta gaviniae
Pathway
pgz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2E15_02790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgz03019
]
C2E15_02790
03009 Ribosome biogenesis [BR:
pgz03009
]
C2E15_02790
Enzymes [BR:
pgz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2E15_02790
Messenger RNA biogenesis [BR:
pgz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2E15_02790
Ribosome biogenesis [BR:
pgz03009
]
Prokaryotic type
rRNA helicases
C2E15_02790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUX92133
UniProt:
A0A2L0IC32
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All DBs
Position
604063..605976
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AA seq
637 aa
AA seq
DB search
MTDIQTTFSDLGLNESILTALNDMGYEKPSPIQAACIPHLLEGRDVLGMAQTGSGKTAAF
SLPLLNNIDSELKAPQILVLAPTRELAVQVAEACNDFSKHMRGVNVLALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVWGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLSARRLEKFAAKVQQQLESSDLEQYRALLSQMSPESDLDMETL
AAALLKMAQGERPLILPPDAPRPQRREFRERDDRRDDRRGSREVRGESREGGERPRRERR
DVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGEI
LQHFTRTRILNKPMNMQLLGDAQPRERGERTERSGERRSSGRGSFGGERREGGGRRFSER
REGGRSGSFNREGGNSRGPRREEGAGAGAGVVRRREY
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatccaaaccactttctccgatctgggtcttaacgaatctatcctcaccgct
ctgaacgacatgggctatgagaagccgtcgccgatccaggccgcctgtatcccacatctg
ctggaaggccgtgatgtgctgggtatggcacaaaccggtagtggcaaaaccgcagcgttc
tccctgccgctgctgaacaatatcgacagcgaattgaaagcgccgcagattctggtgctg
gcgccgacgcgtgagctggcggtgcaggttgcagaagcctgtaacgatttttctaaacat
atgcgcggcgtgaacgtgctggccctgtacggcggccagcgttacgacgtgcagctgcgt
gcgctgcgccagggaccgcaaatcgtggtcggtacgccgggtcgtctgcttgaccacctg
aagcgcggcacgctggatctctctaacctgcgcggtctggtgctggacgaagcggatgaa
atgctgcgtatgggctttatcgaagacgtagaaaccatcatggcgcagatcccggaaggt
catcagaccgctctgttctctgccaccatgccggaagcgatccgtcgcattacgcgccgc
tttatgaaagatccgcaggaagtgcgtatccagagcagcatcacgacgcgtcctgacatc
agccagagctactggactgtgtggggccgtaagaccgatgcgctggtacgtttcctggaa
gcggaagattttgatgcggcgatcatcttcgtacgtaccaaaaacgcaacgctggaagtg
gctgaagcgctggagcgcagcggttacaacagcgccgcgctgaacggcgacatgaaccag
gcgctgcgtgagcagaccctggagcgcctgaaagatggccgtctggatattctgatcgcg
actgacgttgcggcgcgtggtcttgacgtggatcgtattagcctggtggttaactacgac
atcccgatggactcagaatcctacgttcaccgtatcggtcgtaccggccgtgccggccgt
gccggtcgcgcgctgctgttcgtggaaaaccgcgaacgtcgtctgctgcgcaacatcgaa
cgcaccatgaagctgaccattccggaagttgagctgccgaacgcagaactgctgagcgct
cgtcgtctggagaagtttgccgctaaagtacagcagcagctggaaagcagcgatctggag
caataccgcgcgctgctgagccagatgtcgccggaaagcgatctggatatggaaacgctg
gcggccgcgctgctgaaaatggcgcagggcgaacgcccgctgattctgccgccggatgcg
ccgcgtcctcagcgtcgtgaattccgtgagcgtgatgaccgtcgtgacgatcgtcgcggc
agccgtgaagtgcgtggcgaaagccgtgaaggcggcgaacgtccgcgtcgcgagcgtcgt
gacgttggcgacatggagctgtaccgtatcgaagtgggccgtgatgatggcgttgaagtg
cgtcatatcgtgggcgctatcgctaacgaaggcgatatcagcagccgttacatcggtaac
atcaagctgtttggcacccactcaacgatcgaactgccgaagggtatgccgggcgaaatc
ctgcagcacttcacccgcacgcgtattctcaacaaaccgatgaatatgcagctgctgggc
gatgcgcaaccgcgtgagcgtggcgaacgtaccgagcgcagcggcgagcgtcgcagcagc
ggtcgcggcagctttggcggcgagcgtcgtgaaggcggcggtcgtcgtttcagcgagcgt
cgtgaaggcggccgcagcggcagcttcaaccgcgaaggcggcaacagccgtggtccgcgt
cgtgaagaaggcgcaggcgcgggcgccggcgtggttcgtcgtcgcgaatactaa
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