Mixta gaviniae: C2E15_20195
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Entry
C2E15_20195 CDS
T05418
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgz
Mixta gaviniae
Pathway
pgz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2E15_20195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgz03019
]
C2E15_20195
03400 DNA repair and recombination proteins [BR:
pgz03400
]
C2E15_20195
Enzymes [BR:
pgz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C2E15_20195
Messenger RNA biogenesis [BR:
pgz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2E15_20195
DNA repair and recombination proteins [BR:
pgz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C2E15_20195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AUX95148
UniProt:
A0A1X1DYT1
LinkDB
All DBs
Position
complement(4318278..4320104)
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AA seq
608 aa
AA seq
DB search
MSTAAVINHEALAEQVLRDTFGYQQFRPGQQTIIQASLSGRDCLVVMPTGGGKSLCYQIP
ALLREGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREEQQAVMAGCRSGEIRLLY
IAPERLMMDNFLESLTHWQPAMLAVDEAHCISQWGHDFRPEYGALGQLRQRFPSLPVMAL
TATADETTRNDIVRLLQLEDPLIQISSFDRPNIRYMLVEKFKPTEQLLRYVQDQRGKSGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGMENAHRAQVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKAPGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQPCGNCDICLDPPRRYDGMVEAQKAL
STIYRVGQRFGMGYVVEVLRGASNQRIRDLGHDKLPVYGIGREQSHEHWVSVLRQLIHLG
LVTQNITLHSALQLTEAARPVLRGEAPLMLAVPRLVTVKAKYNNQKSYGGNYDRKLFAKL
RKLRKAIADEENIPPYVVFNDATLIEMAEQMPLTASEMLSVNGVGHRKLERFGKPFLVMI
REHVDGEE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcggcagtaattaatcacgaagcgctggccgaacaggtattacgcgatacc
ttcggctaccagcagtttcgccccgggcagcaaaccatcattcaggcgtcgctgagcggc
cgggattgtctggtggtgatgcccaccggcggcggaaaatcgctctgttatcaaattccg
gcgctgctgcgcgaaggtctgacgctggtcgtttcgccgctgatttcactgatgaaagat
caggtcgatcagctgctggcgaacggcgtggcggcggcatgtctgaattcgacgcaaacg
cgcgaagagcagcaggccgtgatggcgggatgccgcagcggcgaaattcgcctgctctat
atcgcgccggaacgcctgatgatggataacttcctcgaaagcctgacgcactggcagccg
gcgatgctggcggtggacgaagcgcactgtatttcccagtggggacacgatttccgcccg
gaatatggcgcgctgggccagctgcgccagcgtttcccgtcgctgccagtgatggcgctg
acggcgaccgccgacgaaaccacgcgtaacgatattgtccgcctgctgcagctggaagat
ccgctgatccagatcagcagctttgaccggccgaatatccgctatatgctggtggaaaag
ttcaagccgaccgagcagctgctgcgctacgtgcaggatcagcgcggtaaaagcggcatt
atctactgcaacagccgggcgaaagtggaagataccgccgcgcgtctgcagagccgcggc
ttaagcgtaggggcctaccacgccggcatggagaacgcccatcgcgcgcaggtgcaggag
gcgtttcagcgcgacgatctacagatcgtggtggcgacggtcgctttcggcatgggcatt
aacaagcccaacgtgcgctttgtggtgcatttcgatattccgcgtaacattgaatcctat
tatcaggaaaccggccgcgccggtcgcgatggcctgccggccgaagcgatgctgctctac
gatccggcggatatggcctggctgcgccgctgcctggaagagaaagcacccggtccgctg
caggatattgagcgtcataagctgaatgcgatgggcgcgtttgccgaagcgcaaacctgc
cgccgcctggtgttgctcaactatttcggcgaaggccgccagcagccgtgcggcaactgc
gatatttgtctcgatccgccacgccgctacgatggcatggtagaggcgcaaaaagcgctc
tcgaccatctatcgcgtcggccagcgttttggcatgggctatgtggtggaggtgttgcgc
ggcgccagcaaccagcgcatccgcgacctgggccacgataagctgccggtctacggtatt
ggccgcgagcagagccatgaacattgggtcagcgtgctacgccagcttatacacctgggc
ctggtcacgcagaacatcacgctgcactcggcgctgcagcttaccgaggccgcccggcca
gtactgcgcggcgaagcgccgctgatgcttgccgtgccgcgtctggtgacggtgaaagcg
aagtataacaatcagaaaagctacggcggcaactacgaccgcaagctgttcgccaaactg
cgcaagctgcgtaaagcgattgccgatgaagaaaacattccgccttatgtggtgtttaac
gacgcgacgctgattgagatggcggagcagatgccgctgacggcctcggaaatgcttagc
gtcaacggtgtcggccatcgcaagctggagcgcttcggcaagcctttcctggtcatgatc
cgcgagcatgtcgacggcgaggagtag
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