Pseudoalteromonas translucida TAC125: PSHAa1001
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Entry
PSHAa1001 CDS
T00282
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase, has polyadenylase activity; part of the degradosome
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pha
Pseudoalteromonas translucida TAC125
Pathway
pha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSHAa1001 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pha03019
]
PSHAa1001 (pnp)
03016 Transfer RNA biogenesis [BR:
pha03016
]
PSHAa1001 (pnp)
Enzymes [BR:
pha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PSHAa1001 (pnp)
Messenger RNA biogenesis [BR:
pha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSHAa1001 (pnp)
Transfer RNA biogenesis [BR:
pha03016
]
Prokaryotic type
tRNA degradation factors
PSHAa1001 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
S1_2
KH-I_KHDC4-BBP
aRib
KH_SLS1_2
DUF3016
Motif
Other DBs
NCBI-ProteinID:
CAI86079
UniProt:
Q3IJ73
LinkDB
All DBs
Position
I:1037949..1040075
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AA seq
708 aa
AA seq
DB search
MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV
NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN
PEIQPDMVALIGTSAALAISGIPFSGPIGATRVGYIDGEYVLNPTLKELEESKLDLVVAG
TDNAVLMVESEADVLAEDIMLGAVVYGHEQAQAIITAIKEFKAEAGKPTWDWTAPAKNVS
LEEKVASIAADKVGEAYRITDKVARKEALGVAKDEVVAVLTSELAEGESLDKQEIGKIFG
SLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT
ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVMPTL
TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVL
SDILGDEDHLGDMDFKVAGTAGGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMD
KAISAPSEELSQFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIA
ATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTER
VNNVTDHLSEGQEVKVKVLEVDRQGRVRLSIKEAMESAAPAADAPTDA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcaattattaaagaatttcaactaggtcaacacacagtgacactagaaactggt
gcaatcgctcgtcaagcagacggcgctgtacttgcaagcattggcgacacttcagtactt
gttactgttgttggtaaacgtgaagcgcaacctggccaagactttttcccactaacagtt
aactaccaagagcgtatgtacgctgctggtcgtatccctggtggtttcttaaagcgcgaa
ggtcgtcctaacgatggcgaaacacttattgcacgtcttattgaccgtccaattcgtcca
cttttcccaagtggttttgtaaacgaagtacaagttattgctactgttgtttctgttaac
cctgaaattcaacctgatatggttgcgttaattggtacttcagctgcacttgctatctct
ggtattccgttcagtggtccaattggtgctactcgcgttggttacatcgacggcgaatac
gtacttaacccaacactaaaagagctagaagaaagcaagctagacttagttgttgctggt
actgataacgcagtattaatggttgagtcagaagcagacgtacttgcagaagacattatg
ctaggtgcggttgtttatggccatgagcaagctcaagcgatcattacagcaattaaagaa
tttaaagcagaagcaggcaagcctacttgggattggactgcaccagctaaaaacgtatca
cttgaagaaaaagtagcgtctattgctgctgataaagtgggcgaagcttaccgcattaca
gataaagtagcgcgtaaagaagcacttggcgtagctaaagatgaagttgttgctgtatta
acaagcgaacttgctgaaggcgagtctttagataagcaagaaattggtaaaatcttcggt
tcacttgagaagaaaatcgttcgtggccgtatcgctgctggcgaaaagcgtatcgatggt
cgtgaaccagatatgattcgtgcacttgacgtaatgactggcgtattaccgcgtactcac
ggttctgctatctttactcgtggcgaaactcaagcacttgtaacagctacacttggtaca
gagcgtgattcacagttaatcgacgatttaactggcacgcataaaaaccactttatgctt
aactacaacttccctcctttttgtgtaggcgaaactggttttgttggttctcctaagcgt
cgtgaaatcggccatggtaaccttgctaagcgtggtattgcagcagtaatgccaacattg
actgaattcccatattcaatccgtgtagtatctgaaatcactgaatcaaacggttcatct
tcaatggcttctgtgtgtggtacttcacttgcacttatgaatgctggtgtaccaattaaa
gcgtctgttgcgggtatcgcaatgggtctagttaaagaagacgataagtttgttgtactt
tctgacatcttaggtgatgaagatcacttaggcgacatggactttaaagttgcgggtact
gctggcggtattacagcactacaaatggacattaagattgaaggtatcactcaagaaatc
atgcaaattgcgcttaaacaagcaaaagctgcacgtttacatatcttagaagtgatggac
aaagcaatttctgcaccgtctgaagagctttctcagtttgctccacgtatttatactatg
aagatcccacagaagaaaatcgctgaagttattggtaaaggtggcgcaacaattcgtcaa
cttactgaagaaactggcacaacgattgaaatcggtgatgatggcacaatcaaaattgca
gcaactgacggcgaaagcgcagcaaatgcaattagccgcattgagcaattaactgctgag
cttgaagtaggtactatttacgaaggtaaagttgtacgtattgttgattttggtgcgttt
gtaaatattcttcctggtaaagatggtctagtacatatttcgcaaattagtactgagcgt
gttaataacgtgactgatcacctttctgaaggtcaagaagttaaagttaaagtactagaa
gtagaccgccaaggccgtgtacgtctaagtattaaagaagcaatggaatctgcagcacct
gcagctgatgcgccaactgacgcataa
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