Pseudoalteromonas translucida TAC125: PSHAa1348
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Entry
PSHAa1348 CDS
T00282
Symbol
topA
Name
(GenBank) DNA topoisomerase type I, omega protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pha
Pseudoalteromonas translucida TAC125
Brite
KEGG Orthology (KO) [BR:
pha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pha03032
]
PSHAa1348 (topA)
03400 DNA repair and recombination proteins [BR:
pha03400
]
PSHAa1348 (topA)
Enzymes [BR:
pha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PSHAa1348 (topA)
DNA replication proteins [BR:
pha03032
]
Prokaryotic type
DNA Topoisomerases
PSHAa1348 (topA)
DNA repair and recombination proteins [BR:
pha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PSHAa1348 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_LysW
Toprim_2
Toprim_4
DUF2399
Motif
Other DBs
NCBI-ProteinID:
CAI86423
UniProt:
Q3IL29
LinkDB
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Position
I:1400089..1402806
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AA seq
905 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFIVKSSIGHVRDLPTSGSGKNKVPATKTPAEVRKLP
PEEKAAYKKQRDYSNLVARMGIDPDKGWEPHYEILPGKEKVVQELKKLAENADQIYLATD
LDREGEAIAWHLQEIIGGEPAKYKRVVFNEITKNAIQQAFETPGELNTDMVYAQQTRRFL
DRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNAES
ELRLEVAKQADKPFKPVNEAQASAAVKSLENAEYKVISVDEKPSKSRPSAPLITSTMQQA
ASTRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSKDAVAMCREYVTEQFGEKYLPKDP
INYSSKGNAQEAHEAIRPSSVTVLSGHIEGVDADAKKLYELIWRQFVACQMVPAEYDLTT
LTVAANDFQLKAKGRVLRFDGWTKVQPAIRKKNEEDQSLPAVTVGETLTLIELDPKQHFT
KPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFFAEKMGEIVTDRLV
ENFEDLMNFDFTAKMEGRLDDIAEGERIWTEVLDKFYADFSTQLTVAKDEPENGGMRLNE
MVETDIECPTCSRKMGIRTASTGVFLGCTGYNLPPKERCTTTMNLVSGDEAVAADSADAE
DLETETLMQMKRCPICETAMDSYLIDETRKLHVCGNNPACSGHVVEQGTFKIKGYDGPLI
ECDKCGADMELKSGRFGKYFGCNNDECKNTRKLLKNGEAAPPKEDPVHITELECEKSDAY
FVLRDGAAGIFLAANTFPKSRETRAPKVEELQRFRDRISPKFYYLADAPAQDPDGNLAVV
RYSRKNKEQYVMTEVDGKATGWTAHYVAGKWVEEAKKKAAPKKKAAAKKAPAKTKAKAKT
KKDDE
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctagtaattgtagagtcacctgctaaggctaaaacaattaataaatat
ttaggtaatgacttcatcgtaaagtccagtattggacacgtgcgagatttacctacttca
ggttctggaaaaaacaaagtgccagcgactaaaacgccggctgaagtgcgtaaattacca
cctgaagagaaagcagcgtataaaaagcaacgagactattctaacttagtcgcgcgtatg
ggcattgaccctgataaaggctgggaaccacattacgaaatactgccaggaaaagaaaag
gtagtacaagagcttaaaaagcttgccgaaaacgctgaccaaatatatctcgcaacggat
ttggatagagaaggggaagcaattgcttggcaccttcaagaaattattggcggtgaacct
gcaaaatataagcgtgtggtttttaacgaaattacaaaaaacgcaattcagcaagcattc
gaaacacccggtgagcttaataccgatatggtatatgcacagcaaacacgtcgcttttta
gaccgtgttgttggttttatggtatctcccttactgtgggcaaaagtggcacgtggactt
tcggctggacgcgtacaatcggtagcagtgcgcttactcgttgagcgtgaacgcgaaatt
aaagcgtttatacctgaagagttttgggatattcatgctgacgttaaaaatgcagagtca
gagttacgcttagaagtagccaaacaagcagacaagccatttaagccagtaaatgaagct
caggcaagcgcagcagttaaaagccttgagaatgcagaatataaagttataagcgttgac
gaaaaaccaagtaaaagtcgcccaagtgcgcctttaatcacctcaactatgcaacaagca
gccagtacacgtttaggctatggcgttaaaaaaaccatgatgctagcgcagcgcttgtac
gaaggcggttacattacctatatgcgtaccgactcaactaatctgtcaaaagatgcggtt
gctatgtgtcgcgaatatgtaacagagcaatttggtgaaaaatacttacctaaagatcct
attaattatagctcaaaaggcaatgcacaagaggcgcatgaagcaattcgtccatctagt
gtaactgtgctttcggggcatattgaaggggttgatgccgatgctaaaaaactatatgag
ctaatttggcgtcaatttgtagcgtgccaaatggtacctgcagaatacgacttaacgaca
ttaacggtagcagcaaatgacttccaactaaaagccaaaggccgtgtgctacgctttgat
ggttggactaaagtacagcctgctattcgtaaaaagaacgaagaagatcagtctttacct
gcagtaacagtaggcgaaacattaacgttaattgaacttgaccctaagcaacactttact
aaaccgccagcgcgttttagtgaagcgagtttagtaaaagagcttgaaaaacgtggcatt
ggccgcccatctacttatgcatctattatttctactattcaagatcgcggttatgtacgg
gttgaaaaccgtcgtttcttcgctgaaaaaatgggtgaaatagttaccgaccgcttagta
gaaaattttgaagacttaatgaactttgactttaccgccaaaatggaaggtcgtttagat
gatatcgccgaaggcgagcgcatttggaccgaagtactcgataagttttatgccgacttt
tcaacgcaattaactgttgcgaaagacgagcctgaaaatggcggaatgcgtcttaatgaa
atggtcgaaactgatattgaatgtccgacttgtagccgtaaaatgggtattcgtacagca
tctactggcgtgttcttagggtgtactggttataacttaccgcctaaagagcgttgtaca
acaacgatgaacttagtatcgggcgatgaagcagttgccgcagacagtgccgatgcagaa
gatcttgaaaccgaaacattaatgcaaatgaaacgttgcccaatttgtgaaacggcaatg
gattcatatctaatcgacgaaacccgtaaattacatgtatgtggtaataacccagcatgt
agtggacacgtagttgagcagggcacgtttaaaattaaaggctatgacgggccacttatt
gaatgtgataagtgtggcgcggatatggaattaaaatcgggacgttttggtaagtacttt
ggttgtaataacgatgagtgtaaaaatacccgtaagttacttaaaaacggcgaagctgcg
ccgccaaaagaagaccctgttcacattaccgaattagaatgtgaaaagtcagatgcgtat
tttgttttacgtgatggcgctgcaggtattttcttggctgcaaataccttccctaaatcg
cgcgaaacacgtgcgcctaaggttgaagagttacaacgctttagagaccgtatttcacct
aagttttattacttagccgatgcaccagcacaagatccagatggaaacttagctgttgta
cgctacagccgtaaaaataaagagcagtatgtaatgaccgaagtcgacggtaaagcgacc
ggttggactgcgcattatgttgcgggtaagtgggttgaagaagcgaagaaaaaagcagca
ccaaaaaagaaagcagctgccaaaaaagcgcctgctaaaactaaggctaaagcaaaaact
aaaaaagatgatgaataa
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