Pseudoalteromonas translucida TAC125: PSHAa1816
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Entry
PSHAa1816 CDS
T00282
Symbol
rne
Name
(GenBank) RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of deoxyribonucleotides via the formation of NDPs
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pha
Pseudoalteromonas translucida TAC125
Pathway
pha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSHAa1816 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pha03019
]
PSHAa1816 (rne)
03009 Ribosome biogenesis [BR:
pha03009
]
PSHAa1816 (rne)
Enzymes [BR:
pha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSHAa1816 (rne)
Messenger RNA biogenesis [BR:
pha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSHAa1816 (rne)
Ribosome biogenesis [BR:
pha03009
]
Prokaryotic type
rRNA processing factors
PSHAa1816 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAI86888
UniProt:
Q3IHD2
LinkDB
All DBs
Position
I:1904072..1907287
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AA seq
1071 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVEY
GADRHGFLPLKEIARTYFPAGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSRLELPKGMGLIVRTAGVGKSFEEL
NYDLKALLVHWEAIGVAADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEA
KAHIERFRPDFMSRVKLYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAVRPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIAL
SILRLIEEEAIKDNTAQVNAQVPVAVAAYLLNEQRRSVHRMEKQHKCDIVIIPNQHMETP
HYEVMRLRKDETIETVSYGQIVAPEPEAFEMSKSPVAPVREEPMLKGVVMPAAPAPQAAP
ANVVAPAETKAQSGLLDAIGKWFKSLFASETVEVKKEETQKQQQETRDNTRNNDNRRRNN
NNQRRRNNPRSKPRTERTADEEVKTNSVSTPEAATQTNENQERGENRNKRRRNPNSRKRP
EPRTEDKDAVKVDAPAKAEAETKPVQAEEPKDQKPKVRRQRRNLRKKVRLQDENAEQVQT
TDETPVQATEKETPVAQEQAPVVEKQTQTAAEKTAHIKEEKVEDVDSNDETPTTEDEQEQ
TRTRSRRSPRHLRASGQRRRRPEGEGNEAKSDEAPAFVPVADQAAAEYEAELKAKSAATP
ADAAQQVEQAVAVEDLAKVEAVEEPVQTEEPAKVETPVVTEEPAKVETPVAAEEPAKVET
PVAAEEPAKVEAPVVTEEPAKVETPLVTEEPAKVEAPVVTEEPAKVETPVVTEEPAKVEA
PVVTEEPTKVETPVVTEEPTKVEAPVVTEEPAKVETPVVTAAPHVKTAIAQGSASAPMAQ
PTPVADSEVKHTSVAMAHDKRELVPDSGLRAGSIKPAGRASSTMTKTMSVD
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcaacgcagcaagaagaaatgcgcgtagcactggttgac
ggccagcgcctatatgatttagatatagaaagcccaggtcacgaacagaaaaaagccaat
atttataaaggcaaaatcactcgtattgaaccatctcttgaagcagcatttgttgaatac
ggtgctgatcgtcatggtttccttcctttaaaagaaattgcccgtacttacttcccagct
gggtatactttccatggccgtccgaatattcgtgacgtgatcaaagaaggtcaagaagtt
atagtacaagttgataaagaagagcgtggccaaaaaggcgcagcacttactacctttatc
agcgttgccggtagctacttagttttaatgcctaataatcctcgtgctggcggtatatct
cgtcgcattgaaggtgatgagcgtactgaactaaaagagtcacttagtcgtttagaactt
cctaaaggtatgggcttaattgttcgtactgctggtgttggcaaatcgtttgaagaatta
aactacgatttaaaagccttacttgttcattgggaagcaattggtgttgcagccgacagt
gctaaagcgccgtttttaatacaccaagaaagcaatgtaatatttcgtgcaattcgcgac
tatttacgtcgtgatattggcgaaatattaattgataaaccacgtgtttttgaagaagct
aaagcgcatattgaacgttttcgccctgactttatgagccgtgttaagctttatcaaggt
gatacgccattatttacgcattaccaaattgaaagccaaattgagtctgcgttccagcgt
gaagtacgcttgccttcaggtggttcaattgtaattgatcctacagaagcattaacctct
atcgatattaactcgtctaaagcaacaaaaggcggcgatattgaagaaacagcacttaat
actaacttagaagcagcagatgaaattgcacgtcaattacgtcttcgtgacttaggtggc
ttaattgttatcgattttatcgatatgacaccaccacgccatcagcgtgaagtagaaaac
cgtctaaaagacgctgttcgtcctgatcgtgctcgtgtgcaaattggtaaaatttcacgt
tttggtttactcgaaatgtcgcgtcagcgtctgcgcccttcattaggtgaagcaagccaa
ggcccatgtccacgttgtagtggtcaaggtacgattcgttctaacgaatcaattgcactg
tctattttgcgtttaattgaagaagaagcaattaaagacaacactgcacaagttaatgct
caagtgcctgttgctgttgccgcttatttattaaatgaacagcgccgtagtgttcatcgc
atggaaaaacaacataagtgcgacatagtgatcattcctaatcaacacatggaaacacca
cactacgaagtaatgcgcttacgtaaagacgaaacgattgaaacagtaagctatggacaa
attgttgctccagagcctgaagcatttgaaatgtctaagtcgcctgtagcaccagtacgt
gaagagccaatgttaaaaggcgttgtaatgcctgcagcaccagctccacaagcggctcct
gctaacgttgttgcccctgcggaaactaaagcgcaaagcggtttactggatgcaattggt
aagtggtttaaatctttattcgccagcgaaaccgttgaagtgaaaaaagaagaaacacaa
aaacagcaacaagaaacgcgcgataatacgcgtaataacgataatcgtcgccgtaataac
aacaatcagcgtcgccgtaataaccctcgttctaagccacgcactgagcgtactgcggat
gaagaggttaaaactaactctgtatcaacacctgaagcagcaacgcaaactaacgagaac
caagagagaggcgagaatcgcaataagcgtcgtcgcaatcctaattcacgtaagcgccca
gagccacgcactgaagataaagatgcagtaaaagttgatgcacctgcaaaagcagaagct
gaaactaagccagttcaagccgaagagccaaaggatcaaaaaccaaaggttcgtcgccag
cgtcgtaatttgcgtaaaaaagtacgcctgcaagatgaaaatgctgagcaggtacaaaca
acagatgaaacacctgtacaagctacagaaaaagaaacaccagtagcccaagagcaagca
cctgttgtagaaaagcaaactcaaacagcggcagaaaaaacagctcatattaaagaagaa
aaagttgaagatgttgattctaacgatgaaacacctacaaccgaagacgagcaagagcaa
actcgtacacgttcacgtcgctcacctcgtcatcttcgtgcatcaggtcagcgtcgtcgt
cgccctgaaggtgaaggcaatgaagctaagtcagatgaagcaccggcatttgttcctgtt
gccgaccaagctgctgcagagtatgaagcagagcttaaagctaaatctgcagctacacct
gcggatgcagcgcaacaagttgaacaagccgttgcggttgaagacttagccaaagttgaa
gctgtagaagagccagtacaaactgaagagccagctaaagttgaaacgccagtagtaact
gaagagccagctaaggttgaaactccagtggcagctgaagagccagctaaagttgaaacg
ccagtagcagctgaagagccagctaaagttgaagcgccagtagtaactgaagaaccagct
aaagttgaaactccattagtaactgaagagccagctaaagttgaagcgccagtggtaact
gaagagccagctaaagttgaaactccagtggtaactgaagagccagctaaagttgaagcg
ccagtggtaactgaagagccaactaaagttgaaactccagtggtaactgaagagccaact
aaagttgaagcgccagtggtaactgaagagccagctaaagttgaaactccagtagtaact
gcagcaccacatgttaaaacagcgatagctcaagggtcagcaagtgcgccaatggcacag
cctacccctgtagctgatagcgaagtaaaacatacatctgttgctatggctcacgataaa
cgtgaactagtgccagacagtggtttacgtgcgggttcaatcaaacctgctggtcgtgca
agttctacaatgactaaaacaatgagtgttgattaa
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