Pseudoalteromonas translucida TAC125: PSHAa1836
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Entry
PSHAa1836 CDS
T00282
Symbol
mfd
Name
(GenBank) transcription-repair ATP-dependent coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pha
Pseudoalteromonas translucida TAC125
Pathway
pha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSHAa1836 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pha03400
]
PSHAa1836 (mfd)
Enzymes [BR:
pha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSHAa1836 (mfd)
DNA repair and recombination proteins [BR:
pha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSHAa1836 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAI86908
UniProt:
Q3IHG1
LinkDB
All DBs
Position
I:1928141..1931614
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AA seq
1157 aa
AA seq
DB search
MAFEQWAALPWVKSQKDKIQWGQLSGSGLSIAIAEGVKQQDNLVLIVTPDTPSALRLETE
LEYLLPDNPVMIFPDWETLPYDHFSPHQDIISARLATLNTLKNEQQSVLIVPVSTLMLRT
APASFIYGSTINFKVGDKLDTHNFRNNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPMGSP
HPFRLDFFDDELDSIRLFDVETQRSDEKVDKIELLPAHEFPTNEADIERFRIAYREKFGA
SAQQDSVYMQVSKGNWPAGIEYYMPLFFEQLATIFDYLPETTTVMQLGDLEHAADNFWHD
VNVRYENRRVDPLRPLLEPSALYQPINELFANLGNYARIRLSQAKLGTKAGNKNLTVSEL
PVIRIDHKQSEPYGAFINYVAAQKKHKGRILLSVESDGRRESLLGVLKPSGLKFKEFTSF
EQFTKSQSDVGLIVSPLEQSVVLGTKPSLSIITEQELLGIKVSQRRRRKHKYQASQDALI
RNLAELKEGQPIVHLDHGVGRYQGLQTIDAAGIITEFVTITYASEAKLYVPVSALHMLSR
YSGGEEASAPLHKLGSDAWDKAKKRAAEKVRDVAAELLDIYAQRQAKPGNKFTLDAPAYR
QFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQ
VAILVPTTLLAQQHFENFKDRFADFPIEVGVLSRFNSPKEQKDTLEKMANGKLDIVIGTH
KLIQADIIFNDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDVELIREAVLREIKRGGQVYFLHNNVETIERVAQEISE
WVPEASVTSAHGQMREQELEQIMADFYHQKYNVLVCTTIIETGIDIPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVKALREGKEPTLENLLQKQTEVDLKLPAL
LPDDYIYDVNARLGMYKRVASCANVADMDELQVELIDRFGLLPDAAKNLFSLQQLKMRAS
DLGITKIEANPKGGYFEFSQNTKVNPSFIIGLIQSAPRVYKMDGANKLRFVISEANARER
LKMVTAMLADFEKKVSH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgagcaatgggcagccttgccttgggtgaaatctcaaaaagataaaattcaa
tgggggcaacttagcggcagcggtttaagcattgctattgctgagggtgtaaaacaacaa
gacaatttagtattaattgtaaccccagacacgccaagcgccctgcgccttgaaaccgag
ctagaatatttattgcccgacaacccggtaatgatatttcctgactgggaaaccctacct
tacgaccatttttctcctcatcaagatattatttctgcccggttagccactttaaatacg
ctcaaaaacgagcaacaaagtgttttaattgtccctgtttctaccttaatgctgcgcacc
gccccggcttcgtttatttatgggtccacaattaactttaaggtgggtgataagctcgat
actcataatttcagaaataatttagaacaagcgggttatttaaacgtacagcaagtaatg
gagcacggcgagtacgccattcgcggctctattgtcgacttataccctatgggcagcccg
catccttttagactcgacttttttgacgacgagctcgacagcattcgtttatttgatgtt
gaaacccagcgctcagatgaaaaagtagataaaattgaactgctcccggcacacgaattt
cccactaacgaagccgacattgaacgctttagaatagcgtaccgtgagaagtttggtgcc
agcgcgcagcaagactctgtttacatgcaagtgagtaaaggtaattggcctgccggtata
gaatattatatgccactgtttttcgagcaactggccactatttttgattacctacctgaa
accacaacggtaatgcagctcggtgatttagaacatgccgccgataatttttggcatgac
gtaaacgtgcgctatgaaaaccgccgcgtagacccactgcgtccattattagagccaagc
gcgctgtatcaacccattaatgaattgtttgctaatttagggaattatgcgcgtattcgc
ttatctcaagcaaagctaggtacaaaagcaggcaataaaaatttaactgttagtgaatta
cctgttattcgcattgatcataaacaaagcgaaccttacggtgcgtttataaactatgta
gcggcgcaaaaaaagcacaaaggccgtattttactaagcgtagagtcggatggccggcgc
gagtcattactgggagtattaaaacctagcggcttaaagtttaaagaatttactagtttt
gagcagtttacaaaaagccaaagcgacgttggcctaattgttagcccactggagcaaagt
gttgtattaggtactaaacctagtttatctattatcaccgaacaagaactgcttggcata
aaagtatcgcagcgccgtcgccgtaagcataaataccaagccagccaagatgcactaatt
cgtaacttagccgaacttaaagaaggccaacctattgtacatcttgatcacggcgttggt
cgctatcaaggtttgcaaaccatagatgccgcaggcattatcactgaatttgttaccatt
acttacgccagtgaagcaaaattgtatgtaccggtttcggcgctgcatatgctaagtcgt
tattcgggcggcgaagaagccagtgcaccactgcataaacttggctcagatgcatgggac
aaagctaaaaaacgtgctgctgaaaaagtgcgcgatgtagccgctgagttacttgatatt
tacgctcagcgccaagcaaaaccagggaataaatttaccctcgatgccccagcttatcgc
caatttagcgacagcttcccgtttgaagaaaccgacgatcaacgcaatgccattgaagcc
gtattaggcgatatgcaatcaaaacaagccatggaccgtttagtgtgtggcgatgtaggc
tttggtaaaaccgaagtcgccatgcgcgccgcatttgtagctgttaacgataacaaacaa
gtagctattttggtgcctacaacattacttgcccaacaacactttgaaaactttaaagac
cgttttgccgactttcctattgaggtaggtgtattgtcgcgttttaactcacctaaagag
caaaaagacacgcttgaaaaaatggccaacggcaagctcgatattgtcattggtactcat
aagctgatccaggctgatattatatttaacgatttaggcttattaattgttgatgaagaa
catcgctttggggtgcgccaaaaggagaagattaaagcgctacgcgccgatgtcgacata
ctcactttaactgcaacgcctatcccgcgtaccttaaatatggccatgagcggtatgcgc
gacttatctattattgccactccacctgcaaagcgtttagcagtaaaaacctttgtgcgc
caacgcgatgtagaattaatacgtgaagcagtacttcgagaaattaaacgcggtggccaa
gtttactttttacataataacgtagagacaattgagcgcgtagcacaagaaataagtgaa
tgggtgcccgaggcaagcgtaaccagtgcacatgggcaaatgcgcgagcaagagcttgag
caaataatggctgacttttaccaccaaaaatacaacgtattagtgtgtaccactataata
gaaaccggtattgacataccaactgctaacaccataattatggatagagccgacaaacta
ggtttagcgcagttacaccaattacgtggacgtgttggtcgcagccatcatcaagcttat
gcctacttattaacaggcgatcctaaagctctttctaaagatgcaagcaaacgcttacaa
gcaatagagtcattagaagacttaggcgcaggttttgcactagcaacccacgatttagaa
attcgtggtgcgggtgaacttttaggtgatgatcaatcaggacaaatgcaaaccattggc
tttagcttatacatggaaatgcttgaacaagcagtaaaagcattgcgagaaggcaaagag
cccacccttgaaaacctcttgcaaaaacaaactgaggtagacttaaagctaccggcttta
ttacccgatgattatatttacgatgtgaacgcacgtttaggtatgtacaagcgcgttgct
agttgtgctaatgttgccgatatggacgaattgcaggtagaattaatcgaccgctttggc
ttattacccgacgcggctaaaaacctctttagcctgcagcaattaaaaatgcgagcaagt
gatttaggtataacaaaaattgaggcaaacccgaaaggtggttactttgaatttagccaa
aacactaaggttaatcctagcttcatcataggcttgatacaaagtgcaccgcgcgtgtac
aaaatggatggcgcaaataaactgcgctttgttattagcgaggcaaatgcccgcgaacgc
ttgaaaatggtcactgcaatgcttgcagatttcgaaaaaaaggttagccattaa
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