Phaeobacter sp. G2: N1037_09460
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Entry
N1037_09460 CDS
T10616
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
phae Phaeobacter sp. G2
Pathway
phae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N1037_09460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phae03019
]
N1037_09460
Messenger RNA biogenesis [BR:
phae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N1037_09460
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UWS81215
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Position
1984595..1986265
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AA seq
556 aa
AA seq
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MSTDERLIYLPLGGAGEIGMNAYVYGYGKPGKERLILVDLGVAFPDMDSTPGVDLIMPDI
SWLRERVDQLEAIFITHGHEDHIGAVSHLYSQLNVPVYARAFTANLARRKMEERGHDPLV
VKTVGAWPEVTKLGPFTVGFAPMAHSIPESAGLVIDSPDGRVVHTGDFKLDRTPLVGEAF
DPEMWAEIAKPGIKALICDSTNVFSKTPGRSESDLPDEITRLIGEAKGMVAATTFASNVA
RVKTLADAGTRAGRSVVLLGRAMLRMVEAAKETGVLKNFPTVYSPEEAKDMPRNNLMLIT
TGSQGERRAASAQMARGKYRGLELKEGDLFLFSSKTIPGNERGVIRIINQFSERGVDVVD
DSSGLYHVSGHANGPDLEALHELLQPAMLVPMHGEHRHLRQHARLGEAKGIPSIVAVNGM
MLNLSGNRPSVLEYIDTGRTYLDGSIKIGAMDGVIRDRIRMALNGHLVVTLILDEEDEPL
GEPWCDIKGLTDNGSSNAALTEVLEEDLNQFLMRAGAKTLKDDDKLEGELRRIARQSCQN
EIGKKPEVTVVISRMR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgatgaacgactgatctaccttccccttggcggggcgggcgaaattggcatg
aatgcctatgtttacggctatggcaaacccggcaaagagcgactgatcctggtggatctg
ggcgttgctttcccggatatggacagcacccccggtgttgacctgatcatgcctgacatc
agctggctgcgcgagcgcgtcgaccagctggaagcgatttttatcacccatggtcacgaa
gaccatatcggggcggtatcgcatctctatagccagctgaacgtgccggtctatgcccgc
gccttcaccgccaatctggcccggcgcaagatggaagagcgtggtcatgacccgctggtg
gtgaaaaccgtcggtgcctggcccgaagtgactaaactgggtcccttcacggtgggcttt
gccccgatggcgcattcgatccccgaaagcgcaggtctggtgatcgatagccccgatggc
cgcgtagtgcatacaggcgacttcaaactggaccgcaccccactggtgggcgaagccttt
gatcctgagatgtgggctgagatcgccaaacctggcatcaaggcgctgatttgcgattcg
accaatgtgttctctaaaacaccgggtcgctcggaatctgatctgccagatgaaatcacc
cgcctgattggcgaggccaagggcatggtggccgccaccacctttgcctccaacgtggcg
cgggtaaagaccctggcagatgccggtactcgggccggacgttcggttgtgctgttgggg
cgggcgatgctgcgcatggtcgaagccgccaaggaaaccggcgttctgaagaatttccca
acggtctattcaccggaagaagccaaggatatgccgcgcaacaacctgatgctgatcacc
actggcagccagggcgaacgccgggccgcctcggcgcagatggcgcggggcaagtatcgc
gggctggagctgaaagagggcgatctcttcctgttctcctctaaaaccatccccggcaac
gagcgtggcgtgatccgcatcatcaaccagttctcggaacgtggcgtggatgttgtggac
gacagttcaggcctttaccacgtctctggccatgcaaatggtcctgatctggaagcgctg
catgagctgctgcaaccggcgatgctggtgcccatgcacggcgaacaccgccacctgcgt
cagcacgcacgcctgggcgaggccaagggcattcccagtatcgttgctgttaacggcatg
atgctgaacctgtcgggcaaccgtccctcggtgctggaatatatcgacaccggtagaacc
tatctggatggttcgatcaaaattggcgccatggacggtgtcattcgcgatcgtatccgc
atggctttgaacgggcatctggttgtcacgctgatccttgacgaagaggacgagcccctg
ggcgagccctggtgtgacatcaaggggctgacggacaatggcagctccaatgcggcgctg
acagaggtgctggaagaggatctgaaccagttcctgatgcgggctggggcaaagacgctg
aaagacgatgacaagctggaaggcgagctgcgccggatcgcccgtcagtcttgccagaat
gagatcggcaaaaaaccagaggtcaccgtggtgatcagccggatgcgttaa
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