Phaeobacter sp. G2: N1037_13380
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Entry
N1037_13380 CDS
T10616
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
phae Phaeobacter sp. G2
Pathway
phae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N1037_13380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phae03019
]
N1037_13380
03009 Ribosome biogenesis [BR:
phae03009
]
N1037_13380
Enzymes [BR:
phae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
N1037_13380
Messenger RNA biogenesis [BR:
phae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N1037_13380
Ribosome biogenesis [BR:
phae03009
]
Prokaryotic type
rRNA processing factors
N1037_13380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UWS78270
LinkDB
All DBs
Position
complement(2827313..2830393)
Genome browser
AA seq
1026 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRAREEDEEAKPSRSRSRGRK
GSRSKAAKVSSGDAVETKEVAPATPASETSADTPVVSEIAGMETIDLVDEMARDEAKLAE
VPEGSSPMERVADTPVEEPSNPEETRSQEAGPDAASAEAASAEEPAQEATAPAAADVTAK
DASVEPTGGDAAEDDAAQNDTDKGASDETGDKAEQDDARVDASAKDETIESVADEDDSED
IRPARKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARG
GGISRKITNAVDRKKLKDIATEIDVPSGAGLIVRTAGAKRTKAEIKRDYEYLQRLWEQIR
ALTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSHAKNV
KNYQETLPLFARFQVESYLGGMFNPTVQLKSGGYIVIDTTEALVAVDVNSGRATKQSSIE
ETALNTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVENRMKDKLKTDRARIQV
GRISGFGLMEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSMALSILRQIEEEGTRRRS
REVLVRCPIDIANYLMNQKREHIAQIEARYGMSVRIEGDAHLVSPDFTLEKFKTATRVVT
VPDASVVSADTSLMAQIDADEAEADAEVAEEEQPQEAAAPEADESENNGEDKPKRKRRRR
RRRKSGNGGENSDSDSNAAEAGDKAEPTADGEEKADAKAGEEADSEEKKPARSRTRTRTR
GGRSRNKKSEETAVEETAVEAAPGADTAAEATGEAPSAEPEATVATSADPASKSDGETVT
AAATEEPTQAESVVPEQTTSEPEASQAEVSEAPVAAVAAEPVAETQPVASDTPEVETVAA
AEAPADQESAAEAAVEPEVTAQPEVADAAAADPAPEPAAPAEVEAAAEPEPTTPPKPKRR
GWWSIG
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgcttattgatgccacccacgcggaagaaacccgcgtcgtggtggtc
gacggaaacaaggttgaagagtttgactttgaatctgagaacaaacgccagctagctggc
aacatttatctggcaaaagttacacgggtagagccttcgctacaggccgcctttgtggaa
tatggcggcaatcgccatggctttctcgccttttcggaaatccaccccgactattatcag
atcccggttgctgaccgcgaagccctgatggaagaagagcgcgcctatgcggaagcacag
cgtgcccgcgaggaagacgaagaggccaagccttcacggtcgcgctcacggggtcgcaag
ggctcccggtccaaggctgctaaggtctcctctggggatgcggtcgagaccaaagaggtg
gcgcccgctacacctgcctctgaaaccagtgctgatacgccggtggtttcggaaatcgct
ggtatggaaaccattgatttggtcgacgaaatggcgcgcgatgaggccaagctggccgag
gtccccgaaggctcctcgccgatggaacgtgttgctgacaccccggtagaagagccctcc
aacccggaagagacgcgctcgcaagaggccggcccagacgcagcaagcgctgaagccgcc
agtgcagaagagcctgcgcaagaggcaactgcgccagccgctgcggatgtaaccgctaag
gacgcaagtgttgaacccaccggcggtgacgctgccgaggatgacgccgcccagaatgac
actgacaaaggcgccagtgatgagaccggcgacaaagcagagcaggacgatgcgcgtgtt
gatgccagcgccaaagacgaaaccattgaatcggttgctgacgaagacgacagcgaagac
attcgcccggcccgcaagccacgtccacgtcggtataagattcaagaagtcatcaaggtc
cgtcaggttctgctggtccaggttgtcaaagaagagcgcggcaacaagggcgctgctctc
accacctatctgtcgctggcagggcgctactgcgttctgatgcccaacaccgcgcgcggt
ggcggcatcagccgcaagatcaccaatgccgttgaccgcaaaaaactgaaagatatcgca
accgaaatcgacgtgccatcgggtgcggggcttattgtgcgcacggctggggccaagcgt
accaaggcagaaatcaaacgcgattacgaatatctgcagcgtctctgggaacagatccgc
gcgctgacgctgaaaagcattgcccccgccaagatctacgaagagggcgacctgatcaaa
cgctcgatccgcgacctttataatcgtgagattgacgaggttctggtcgaaggcgagcgc
ggctaccgcatcgccaaggacttcatgaagatgatcatgccgtcccacgccaaaaacgtg
aagaactaccaggaaaccctgccgctctttgcccgcttccaggtcgaaagctatcttggt
ggtatgttcaaccccactgtgcagctgaaatccggcggctatatcgtcatcgacaccacc
gaagctttggtggcggttgacgtgaactctggccgggcgacaaaacagtcctcgatcgag
gaaaccgcgctcaacaccaacctggaggccgccgaagaagtggcgcgccagctgcgtctg
cgtgaccttgccggactgatcgtcatcgacttcatcgacatggatgagcgtaagaacaac
gccgccgttgagaaccggatgaaggacaagctgaagacggatcgtgcccgcattcaggtg
ggccggatctctggttttggcttgatggaaatgtcgcgccagcgtctgcgtcccggcatg
atcgaggccaccaccgcgccctgcccacattgccacggcaccggcctgatccgctcggat
gatagcatggcgctgtcgatcctgcgccagatcgaagaagaaggcacccgccgccgctcg
cgcgaggttctggtgcgttgcccgattgatattgccaactatctgatgaaccagaagcgt
gaacatatcgcgcagatcgaagcccgctacggcatgtcggtccgcatcgaaggcgatgca
catctggtcagcccggatttcacgctggagaagttcaagacggccacccgtgtggtgact
gttcctgacgcttcggttgtgtcggctgatacctctcttatggcgcagatcgacgctgat
gaggccgaggcggatgctgaggttgcagaggaagaacagcctcaggaggctgcggctcct
gaagcggacgaaagtgagaacaacggcgaggacaagcccaagcgcaagcggcggcggcgt
cggcggcgcaagtccggcaacggcggggaaaactccgattccgatagcaacgcggccgag
gctggcgacaaggctgaacccacagcggacggggaagaaaaagccgacgcaaaagcaggt
gaagaggccgattctgaagagaagaagccagcccgcagccggacccgtacccgcacccgt
ggtggtcgttcgcgcaacaagaaaagcgaagagaccgcagttgaagagaccgcagttgaa
gccgcaccgggcgcagacacagctgccgaggcgactggcgaggcccccagcgcagagccg
gaagccacagtggcgaccagtgccgatccagccagcaaaagcgatggcgagaccgtaacc
gctgctgccactgaagagccaactcaggctgagagtgtcgtgccggagcagaccacctct
gaacctgaggcatcgcaagctgaggtgtcagaggctccggtcgcagcggttgctgctgaa
ccagtcgctgagacacaaccggttgcatctgacacgccggaagtggaaactgtagctgcc
gccgaagcgcctgcggatcaagagagtgcagctgaggccgccgttgagccagaggtgaca
gcacagccagaggtcgctgacgcagctgctgctgaccccgcgccggaacctgcagcgcct
gcagaagtggaagccgcggctgagccagaaccgacaaccccgcccaagcccaagcggcgc
ggatggtggtccatcggataa
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