Phaeobacter sp. G2: N1037_13805
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Entry
N1037_13805 CDS
T10616
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
phae Phaeobacter sp. G2
Pathway
phae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N1037_13805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phae03019
]
N1037_13805
Enzymes [BR:
phae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N1037_13805
Messenger RNA biogenesis [BR:
phae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N1037_13805
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
Utp25_C
ERCC3_RAD25_C
AAA_19
SUa-2TM
Cas3-like_C_2
Gamma_PGA_hydro
Motif
Other DBs
NCBI-ProteinID:
UWS78347
LinkDB
All DBs
Position
2920434..2921759
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AA seq
441 aa
AA seq
DB search
MTEFSTMGLPDLVLARLADMGLKEPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPL
IARMLDYGRKPAAHTVRGLVLAPTRELANQIAATLKDLTEGTPMKIGLVVGGVSINPQIQ
RISRGTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKISALLPEE
RQTMLFSATMPKQMNEIANSYLNRPVRIEVSPPGKPAAKVTQSVHFIAKAEKLSLLKELL
TEHKDERTLVFGRTKHGMEKLMKVLEKSGFAAAAIHGNKSQGQRERALAAFKSGQIKVLV
ATDVAARGLDIPDVKYVYNYELPNVADAYVHRIGRTARAGKDGQAVAFCAPDEMEELKAI
QKVMKITIPTASGSPWEPVPGASPARGGRPGGKPGGKPGGNRRRGGGGRGQSQGGGKPGG
SANGSGAGAGGGAGNRRRQAR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaattttcgacaatgggcctgcccgatcttgttctggcccgtctggccgatatg
ggtctgaaagagccaaccccgatccaggcccgcgccattccccacgccctgaacggcgaa
gacgtgctgggtctggcccagaccggcaccggtaaaactgctgcctttggcgtgcccttg
atcgcccgcatgctggactatggccgcaaacctgccgcccataccgtgcgcggcctggtg
ctggcgcccacccgcgaactggccaaccagattgccgccaccctgaaagacctgaccgaa
ggcaccccgatgaaaatcggcctggtggtcggcggtgtttcgatcaacccgcagatccag
cggatctcccgcggcaccgacattctggtggctacccctggccgcctgctcgatatcctg
gaccgcaaggcgctggatctaggctcctgcgatttcctggtgctggacgaggccgaccag
atgctggacctcggctttatccatgcgctccgcaaaatttctgccctgctgcccgaagag
cgccagaccatgttgttttcggccactatgcccaagcagatgaacgagattgccaactcc
tatctcaaccgtcctgtgcgcatcgaagtctcccctccgggcaagcccgcagccaaggtg
acgcaatcggtgcatttcatcgccaaggcggaaaagctgagcctgctgaaggaattgctg
accgagcataaggatgagcgcacgctggtctttggccgcaccaaacacggtatggaaaag
ctgatgaaagtgctggagaaatccggctttgccgcagctgccattcatggcaacaaaagc
cagggccagcgcgagcgcgcattggcagcctttaaatcaggccagatcaaggtcttggtt
gcaacggatgttgcggcccgtggcctggacatccccgatgtcaaatatgtctacaactac
gagctgcccaatgtagcggatgcctatgtgcaccggatcggtcggacagcgcgcgctggc
aaggacggccaggccgttgctttctgtgcccccgatgagatggaagagctgaaagcgatc
cagaaggtgatgaaaatcaccattccaaccgcctccggtagcccatgggagccagttccc
ggcgccagccccgcacgtggtggccgtcccggtggcaaaccaggcggcaagcccggcggc
aaccgtcggcgcggcggtggtggtcgcggccagtcccagggcggtggtaaacccggtggg
tccgccaatgggtccggcgcaggcgcaggcggtggtgcaggtaaccgacgccgtcaggcc
cgctaa
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