Providencia hangzhouensis: PZ638_02440
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Entry
PZ638_02440 CDS
T09403
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
phag
Providencia hangzhouensis
Brite
KEGG Orthology (KO) [BR:
phag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phag03016
]
PZ638_02440
Enzymes [BR:
phag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PZ638_02440
Transfer RNA biogenesis [BR:
phag03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PZ638_02440
Prokaryotic type
tRNA splicing ligases
PZ638_02440
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WNK24760
UniProt:
A0ABY9ZAH3
LinkDB
All DBs
Position
complement(561398..562624)
Genome browser
AA seq
408 aa
AA seq
DB search
MNNNNFNQLIQENGVPVKMWTNGVPVDPKAVTQLQNTAKMPFIFKHLAVMPDVHVGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVKTSLTASDLPDSLQNIRFAIEAAVPHGRTTHRH
GRDKGAWHRTPDIVDTHWAHLDEEFKRICDKYPKLRGTNHYNHLGTLGTGNHFIELCLDE
QDRVWVMLHSGSRGVGNAIGNLFITLAQKDMQQHIANLPDRDLAYFEEGSVHFNDYMEAV
GWAQDFARHNREVMMHRVLEALSREIPKPFITEQEAVNCHHNYVQKEQHFGEEVLVTRKG
AVSARKGQMGIIPGSMGAKSFIVRGLGDEESFCSCSHGAGRVMSRTEAKKRFSVSDQKMA
TAHVECRKDSDVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaataactttaatcaattaattcaagaaaatggcgtacctgtaaaaatgtgg
accaacggcgtgcctgtggatcctaaagcggtaacccagttacaaaatacggccaaaatg
ccattcatttttaaacaccttgccgttatgcctgatgtacatgtcgggaaaggttcaacc
attggaagtgtgatcccaaccaaaggggccattattcctgcggcggttggtgtggatatt
ggttgtgggatgattgcggtaaaaacgtccttaacggcatcagatttgccagatagcttg
caaaacatccgttttgctattgaggcggcagtaccacatggccgaaccacacatcgacat
ggacgagataaaggggcttggcatcgtacaccggatattgtcgatacccactgggcgcac
ttggatgaagagttcaaacgtatctgtgataaatacccaaaactgcgtggaacgaatcat
tacaaccacttagggacattgggaacagggaaccactttattgagctgtgtttagatgaa
caagaccgtgtttgggtaatgctacatagcgggtcacgcggtgtgggaaatgcgattggt
aacttatttatcacgttggcgcaaaaagatatgcaacagcatatcgccaatttgccggat
agagacctcgcgtatttcgaagaaggaagcgtgcattttaatgactatatggaagcggta
ggttgggcgcaggactttgctcgccataaccgtgaagtgatgatgcaccgcgttctggaa
gcactatcacgcgaaattccaaaaccgtttatcacagagcaagaagccgtaaattgccat
cataactatgtgcaaaaagagcagcactttggtgaagaagtactggtaacccgaaaaggt
gccgtgtcggctcgaaaaggccaaatggggatcattccagggtctatgggagccaaaagt
tttatcgtgcgcggtttaggtgacgaagaaagtttttgctcctgtagccacggtgcaggc
cgtgtaatgagccgaacagaggccaaaaaacgtttctcagtcagcgaccaaaaaatggcg
accgcccatgttgagtgccgaaaagatagtgatgtgattgacgaaataccgatggcgtac
aaagacatcgacgcagtaatggctgcgcaatcatcattagtagaaattgttcatacccta
cgccaagtggtgtgtgtgaagggttaa
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