Providencia hangzhouensis: PZ638_19005
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Entry
PZ638_19005 CDS
T09403
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phag
Providencia hangzhouensis
Pathway
phag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PZ638_19005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phag03019
]
PZ638_19005
03009 Ribosome biogenesis [BR:
phag03009
]
PZ638_19005
Enzymes [BR:
phag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PZ638_19005
Messenger RNA biogenesis [BR:
phag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PZ638_19005
Ribosome biogenesis [BR:
phag03009
]
Prokaryotic type
rRNA helicases
PZ638_19005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
WNK23988
UniProt:
A0ABY9Z8E6
LinkDB
All DBs
Position
complement(4155697..4157628)
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AA seq
643 aa
AA seq
DB search
MTTETDISFAELGLSASILTALNDLGYEKPSPIQQQCIPLLMDGNDVLGMAQTGSGKTAA
FSLPLLHNIDPDLKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPDADLLSQRRQAKFAEKIQQQLESSDLDQYRSLLAKMSPSEDVDME
TLAAALLKMAQGERALILPPDAPRRPRREFNDRDDRRGDRRNSNGNGFDRAERGERGGRR
ERRDVGDMEMYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLYGTHSTIELPKGMP
TDVLTHLSRARILNKPTQMQLIGDAQPFERRGGGERRGGGRRDGGSEGGFGAGRRNDRGG
ERGGERRSGGERRGGGNRDRGNSAPRQDGTNAAPRRRSSSHNA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagaccgatatttcttttgctgagttaggtttatcagcatctattttgaca
gcactaaatgacctgggatatgaaaaaccatcaccaatccaacagcaatgtattccattg
ttaatggatggcaacgatgtattaggtatggcacaaacaggtagcggtaaaactgctgca
tttagtttgccattactgcataacatcgacccagatttaaaagctccgcaaattttagta
cttgctccaactcgtgagttggctgttcaggtagcggaagcaatgagtgatttctctaaa
catatgaaccgcgttaacgttgttgccctgtatggtggtcaacgttatgacgtacaatta
cgtgcactgcgccaaggaccacaaattgttgtgggtacaccaggccgccttcttgatcac
ttaaaacgtggcacgttagatctttctaaattaaaaggcttagtcttagacgaagctgat
gaaatgctgcgtatgggcttcattgaagatgttgaaaacatcatgagccaaattccagct
gagcaccaaactgcgctgttctctgcaacaatgcctgagccaattcgtcgtattacacgt
cgttttatgaaagacccgaaagaaattcgtattcaggctagcattacaacccgtccagac
attgctcagagctattggacagtgtacggtatgcgtaaaaatgaagcgttagtgcgtttc
ttagaagcagaagactttgatgcagcaattattttcgtgcgtaccaaaaatgcaacatta
gaagtggctgaagcgttagaacgcaatggctacaacagtgctgcactaaatggtgacatg
aaccaagcactgcgtgagcaaactttagagcgcttaaaagatggtcgtttagatatcttg
attgcaactgacgttgcagcgcgtggtttggacgttgagcgtattagtttagttgttaac
tatgacatcccaatggatgccgagtcttacgttcaccgtattggccgtacaggccgtgcg
ggtcgtgcgggccgtgcgttactgtttgttgagaaccgtgaacgccgtctgctacgtaac
gttgaacgtacgatgaaactgactattcctgaagttgaattaccagatgcagatctgctg
agccaacgtcgtcaggcgaaatttgctgagaaaattcaacagcaattagaaagcagcgat
ttagaccaatatcgttcactgttagcaaaaatgtctccatcagaagatgtagatatggaa
actttagccgcagcattactgaaaatggcacaaggtgaacgtgctctgatcctgccacca
gatgcgccacgtcgtccacgtcgtgaatttaatgatcgcgatgatcgccgtggtgatcgc
cgcaacagcaacggcaatggttttgaccgtgcagaacgtggtgagcgtggcggacgtcgt
gagcgtcgtgatgtcggtgatatggaaatgtaccgtattgaagttggccgtgatgatggt
gtggaagttcgtcacattgttggtgcgattgctaacgaagcggatatcagcagccgttat
atcggtaatatcaaattgtacggaacgcactcgacaattgaattaccaaaaggcatgcca
actgacgtgttaactcatttaagtcgcgcacgcattttgaataaaccaactcaaatgcag
ctgatcggtgatgcacaaccgttcgaacgtcgcggcggtggtgagcgtcgtggtggtggt
cgtcgtgatggcggcagcgaaggtggctttggtgcaggtcgtcgtaatgaccgtggcggt
gagcgcggtggcgaacgtcgtagcggtggtgagcgtcgtggcggtggtaaccgtgaccgt
ggtaactctgctccacgtcaagatggtactaatgcagcacctcgtcgtcgtagcagcagc
cataacgcgtaa
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