Panicum hallii (Hall's panicgrass): 112872376
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Entry
112872376 CDS
T07366
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112872376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112872376
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112872376
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112872376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
112872376
NCBI-ProteinID:
XP_025791243
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Position
8:complement(42992963..42993862)
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AA seq
299 aa
AA seq
DB search
MFPPPFLQFPQPYGFFPYYGGYAPEMGLSIQVVTAANFEAELNTIAALLRRFPVIAIDAE
YPGTVHRPPAGRREGGLTPDERYTLVKANVDELPVVRLGITLCDADGNVPLVAGRPCEQR
AWEFIFSDFDLLRDRHAPESVAFLRSRGVDFRQAREGGVRSAAFAARLAAVLAPAQLRGD
LAWAAFGGAYDFAYMVKMLSGGQPLPGTWHEFIAQARALLGGRVFDGKYMAEHSGRPDLC
RGGLRSVAARLGVPLPNPAPPCLAGPKSHTACGIYTAMRRHFRDHDHGACFDGLIDGFH
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgttcccgccgccattcctccagttcccgcagccttacggcttcttcccgtactacggc
gggtacgcccccgagatgggcctctcgatccaggtcgtgaccgcggccaacttcgaggcg
gagctcaacaccatcgccgccctgctgcggcggttccccgtcatcgccatcgacgcggag
tacccgggcacggtgcaccgcccgcccgcagggcgccgcgagggcggcctcaccccggac
gagcgctacacgctcgtgaaagccaacgtggacgagctccccgtcgtccggctcggcatc
acgctctgcgacgcggacgggaatgtcccgctcgtcgccggccgcccctgcgagcagcgc
gcctgggagttcatcttctccgacttcgacctcctccgcgaccgccacgcgccggagtcc
gtggcgttcctgcggtcccgcggcgtcgacttccgccaggcgcgcgagggcggcgtgcgc
tccgcggcgttcgcggccaggctcgccgccgtcctggccccggcgcagctgcggggggac
ctggcgtgggcggcgttcggcggcgcgtacgacttcgcctacatggtgaagatgctctcc
ggcggccagccgctgccggggacctggcacgaattcatagcgcaggcgagggccctcctc
ggcgggcgggtgttcgacggcaagtacatggcggagcactccgggcgcccggacctgtgc
cgcggcggcctgaggagcgtggcggcccgcctcggcgtgccgctgcccaacccggcgcca
ccgtgccttgccggcccgaagagccacactgcctgcggcatctacacggcgatgaggagg
cacttccgggaccatgaccacggcgcctgcttcgacgggctcatcgacggcttccactga
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