Panicum hallii (Hall's panicgrass): 112873777
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Entry
112873777 CDS
T07366
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112873777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112873777
03041 Spliceosome [BR:
phai03041
]
112873777
03036 Chromosome and associated proteins [BR:
phai03036
]
112873777
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112873777
Spliceosome [BR:
phai03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112873777
Complex B
112873777
Complex C
U2 SnRNP specific factors
112873777
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112873777
TFTC complex
112873777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
112873777
NCBI-ProteinID:
XP_025792610
LinkDB
All DBs
Position
9:72315354..72321287
Genome browser
AA seq
1230 aa
AA seq
DB search
MYLYSLTLQRATGAVCAVIGSFSGRDTKKSAASGSASTQEIAVARGSTLDLLRPDPETGR
LRTLLSVDVFGVIRSLAQFRLTGANKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGK
SGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNTITFS
LTALDCGFDNPIFAAIELEYAESDRDPTGQAANQAQKLLTFYELDLGLNHVSRKASEPID
NGANLLVTVPGGGDGPSGVLVCCDNFVLYRNQGHPEVRAVIPRRADLPAERGVLIVAAAT
HRQKSMFFFLLQTEYGDIFKVDLEHSGETVTELRIKYFDTIPVASATCVLRSGFLFAASE
FGNHALYQFRDIGRDADVESSSATLMETEEGFQPVFFQPRPLKNLIRIDEIESLMPVMDM
RIANLFDEETPQLFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNINDMF
DAYIVVSFANVTLVLSIGETIEEVSDSQFLDTTHSLAVTLLGEDSLMQVHPNGIRHIRED
GRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLA
IAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLLFLEVQASVGG
EDGADYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAML
CLSSRPWLGYIHQGHFLLTPLSCDTLESASSFSSDQCSEGVVAVAGDALRIFTIERLGET
FNEMAIPLRYTPRKFVILPKKKYIAVIESDKGAFSAEEREAAKKECLEASGAAENGNANN
GDPMENGDGQGDGAEEGNIFPDEQYGYPKAESERWVSCIRILDPRSRDTSCLLELQDNEA
AVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRTLAGGFIHIYKFVDEGKSLELLHKTQVE
EVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIVSIHTYRDRIYVGDMQ
ESFHYCKYRRDENQLYIFADDSVPRWLTAAQHIDFDTMAGADKFGNIYFARLPQDISDEI
EEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTSLQKASLIPGGGECLIYGTVMGSV
GALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPSLP
ADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctgacgctgcagcgcgcgacgggcgccgtgtgcgccgtcatcggc
agcttcagcgggcgcgacacgaagaagtcggcggcctccgggtccgcctccacgcaggag
atagccgtcgcccggggcagcacgctcgacctcctccgcccggacccggagaccggccgc
ctccgcacgctcctctccgtcgacgtcttcggcgtcatccgctcgctcgcgcagttccgc
ctcaccggcgccaacaaggactacctcgtcgtcggctccgactcgggccgcctcgtcatc
ctcgagtactcccccgaccgcaaccgcttcgacaaggtccaccaggagaccttcggcaag
tccggctgccgccgcatcgtgcccggccagctactcgcggtcgaccccaagggccgcgcg
ctctgcatcgccgcgctcgagaagcagaagctcgtctacgtcctcaaccgcgacgccgcc
gcgcgcctcaccatctcgtcccctctcgaggcgcacaagtccaacactattaccttctcc
ctcaccgccctcgactgtggattcgacaaccccatcttcgccgccatcgagctcgagtat
gctgagtctgaccgcgaccccacggggcaggctgctaaccaggcgcagaagctcctcacc
ttctacgagcttgacttgggcctcaaccatgtctcccgcaaggcctctgagcccattgat
aatggtgccaatcttcttgtgactgtccctggtggtggcgatggtccgagtggggttctt
gtgtgctgtgacaacttcgtgctgtaccggaaccaggggcatccagaggttcgtgctgtt
attccacggcgtgctgacctccctgctgagcgtggtgtcctcattgttgctgctgctaca
cacagacaaaagagtatgttcttcttcttactacagaccgagtatggtgacatcttcaag
gtggaccttgaacatagtggggaaactgttactgagctcaggatcaagtactttgatacc
atacctgtagcatcagctacctgtgtgctgcgatcgggtttcctctttgctgcttctgag
tttggcaaccatgcactttaccagttccgtgatattggccgggatgcggatgttgagtca
tcttcagcaacactgatggagacagaggaggggttccagccggttttctttcagccaagg
ccactaaagaacctcatccgcatagatgagatcgagagcctcatgccagtcatggatatg
cgtatcgcgaatttatttgacgaggaaacaccccaattgttcacagcctgtggccgaggt
ccacgctccacgctgcgcatcctgaggcctggccttgccattagcgagatggcacgatca
atgctacctgctgagcctattgctgtatggactgtcaagaagaatatcaatgacatgttt
gatgcctacattgttgtgtcctttgctaatgtcacgctcgtgctctctattggtgagacc
attgaagaagtcagtgacagccagttcctggacaccacccactcccttgcagtcacactc
cttggtgaggattctctcatgcaggtccatccaaatggtatcaggcacatcagggaggat
ggccgtgtcaatgagtggagaactcctggaaagaaaactataacaaaggttggatcaaac
cggctccaggtggtaattgccctcagtggtggagagctcatctattttgagatggacatg
acgggtcagctcatggaggtggagaagcaggacatgtctggcgatgttgcatgcctggcc
attgcgccggttcctgagggtaggcaaaggtccagatttcttgctgtaggatcctatgat
aacaccatccgtatcctctcgctggaccctgatgactgcctgcagcctttaagtgtgcag
agtgtatcatcggcaccagagtcactcctattcctagaggtccaggcatcagttggtggt
gaggatggtgcagactatccagccaaccttttcctcaatgctggcttgcagaatggtgtt
cttttccggaccaatgttgacatggttacgggccagctatcggacacacggtctcgattc
cttggcctcagacctccaaagctgtttccctgtatagttagccacaggcaagcaatgctt
tgcctgtccagccgtccctggctaggctatatacatcaaggtcacttcctcttgacgcct
ctgtcttgtgatacactcgaatctgcttcatccttctcttctgatcagtgctcggaaggt
gttgttgctgttgccggagatgccctacgtattttcaccattgaacgcctgggggagact
ttcaatgagatggccatccctctgcgctacaccccaaggaagtttgtgattctaccaaag
aaaaaatatattgctgtcattgagagcgataagggtgcattcagcgcagaagagcgagaa
gctgctaagaaagagtgcctcgaggcttctggtgcagcggagaatggaaatgcgaacaat
ggggatccaatggagaatggtgatggtcaaggagatggtgctgaggagggcaacatattt
cctgatgaacagtacggttatccaaaggcagaatcggagcggtgggtttcctgcattagg
atccttgatccaaggagtagggacacgtcctgtctgctggaattgcaggacaatgaggct
gctgtcagtatttgcactgtgaatttccatgataaggagcacggcactcttctggctgtt
ggcactgccaagggattgcagttctggccaaagaggacccttgctggtgggttcatccac
atatataagtttgtggatgaagggaagtcacttgaacttctacacaaaacacaagtggag
gaagtacctcttgcgttgtgccaattccagggacggttacttgcaggtgttggttcagtg
ctcagactatacgatctggggaagaggaaattgctcaggaaatgtgaaaacaagcttttt
ccgagaacaatagtgtctattcatacctaccgtgataggatctacgttggtgatatgcaa
gagtcatttcactactgcaagtacagaagggatgaaaaccagctgtatatctttgctgat
gacagtgttcccagatggctcacagcagctcaacacatagactttgacactatggctgga
gctgacaagtttgggaatatatattttgctcgtcttcctcaggatatctcagatgagatt
gaagaagacccaactggaggcaagattaaatgggagcaagggaagttaaatggtgcccct
aacaaagttgaggaaatcgtgcagtttcatgttggtgatgttgtcacaagtttgcagaag
gcctctttaattcctggtggaggtgaatgtcttatttatggaactgtgatgggcagtgta
ggggcactgcttgcatttacctccagggaagatgttgacttcttctctcacttggagatg
catctccgtcaggagcatccgccattatgtggaagagatcacatggcttacagatctgca
tattttccggtgaaggatgtgatagatggcgatctctgcgagcagtatccatccctacca
gctgatatgcagaggaagatagctgatgagcttgacagaactcctggtgaaatccttaag
aagctagaagacattaggaacaagatcatctaa
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