Panicum hallii (Hall's panicgrass): 112874157
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Entry
112874157 CDS
T07366
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112874157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112874157
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
112874157
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
ELL
zf-RING_13
DUF1258
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
112874157
NCBI-ProteinID:
XP_025793122
LinkDB
All DBs
Position
9:29909966..29927626
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AA seq
531 aa
AA seq
DB search
MGSADLVLKPACEGCGNTSDLYGTGCKHTTLCSDCGKSMARSRARCLVCSSPITRLIREY
NVRANAITDKTYSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPDNMREKYNRKPWI
LEDETGQYQYQGQMEGSQSATATYYLLMRHGKEFNAYPAGSWYNFSKIAQYKQLTLEEAE
EKMNKRKTSATGYERWMMKAAANGPAAFGSDMKKLEATPGGEKESARPKKGKSNEEGNNS
DKGEEDEEEEAARKNRLGLTKKGLDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA
VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRAAGLNESDADEDE
EEEEQEDESSPVLAPKQKDQVKDEPVDNSPVKPTPSGHARSTPPASKSKQKRKSGADDAK
TSGSAASKKAKVEWDTKASNIKEEAPSSAKPTLKSSASSKSATNVLPVTEDEIRSVLLAV
APVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRDDKK
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgcggacctggtgcttaagccggcgtgcgagggctgcggcaacacgtcggac
ctttacggcacgggatgcaagcacaccacgctctgcagcgactgcgggaagtccatggcg
cgctcccgcgcccgctgcctcgtctgctcctcgcccatcaccaggctcatccgggaatat
aatgtccgagctaatgctattacggataagacatactctattggaagatttgtcactggt
ttgcctcctttctcgaagaagaagagtgctgagaacaagtggtctcttcataaggagggt
ctacaagggcgtcagatacctgacaatatgcgggaaaaatacaacaggaaaccatggatt
ttggaagatgaaacaggccaatatcagtatcaaggtcaaatggaaggatcacagtcagct
acagctacatattatttgttaatgaggcatggcaaggaatttaatgcctatcctgctggt
tcttggtataacttcagtaaaattgcacagtacaaacaactgacactggaggaggctgaa
gaaaagatgaataagaggaagaccagtgcaactggttatgaacgttggatgatgaaagca
gctgcaaatgggccagctgcctttggttcagacatgaagaaacttgaggccacccctggt
ggggaaaaagaaagtgctcgtcctaagaaaggaaaaagtaatgaggagggtaataattct
gataaaggtgaggaggatgaagaagaggaagcagcacgcaagaataggcttggactcact
aaaaaaggcttggatgatgatgaggaaggtggaaaagatctagacttcgatttggatgat
gaaattgagaaaggtgatgactgggaacatgaagaaacttttactgatgatgatgaggct
gtagatatcgatccagaggaacgggcggatttagctcctgaaattcctgctccacctgaa
attaagcaggatgatgaagagaatgaagaagaaggtggtctgagcaagtctggcaaagaa
ttaaaaaagctgcttggtcgtgctgctggactaaatgagtcagatgctgatgaggatgaa
gaagaagaagaacaggaagatgagtcatctccagtgctggctccaaagcagaaggatcaa
gttaaggatgaacctgtagataacagtccagttaaaccaacaccatcaggacatgcccgc
agcacacctcctgcatcgaaatccaagcaaaagagaaaatcaggtgctgatgatgcaaaa
acttctggcagtgcagcttcaaagaaagcaaaggtggaatgggatacgaaagcatcaaat
atcaaagaggaagcaccttcttcggcaaaacctacattaaaatcctctgcttcatcaaaa
agtgcgacaaatgtattacctgttacagaggatgaaatcaggagtgttcttcttgctgtg
gctcctgtcaccacacaagatctagtatccagattcaagtctaggcttcgaggtccagag
gacaagaatgctttcgctgaaattctgaagaaaatttcgaagatacaaaagacgaatggc
cacaactacgttgtccttagagacgacaagaagtga
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