Panicum hallii (Hall's panicgrass): 112874228
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Entry
112874228 CDS
T07366
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phai03400
]
112874228
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
112874228
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
112874228
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
DExH14_plug
ResIII
Helicase_C
AAA_22
DEXQc_Suv3
AAA_19
AAA_30
T2SSE
Motif
Other DBs
NCBI-GeneID:
112874228
NCBI-ProteinID:
XP_025793219
LinkDB
All DBs
Position
9:68272815..68291703
Genome browser
AA seq
2082 aa
AA seq
DB search
MLAPLPRLTSALRGHFDADQAYLLRKTILQALTLPRPHDEWELARKIVPGWDDASSEVRQ
AYKQFIGAVGEMLNGEVVSEELREVAQTAYALFGGDDTEYDAPQRAFVKRNELERLVGYT
VQDSVLKKLAQLAQKLGSLQRASAHEFAHRKADDVDENERSEFGADFDFKPPARFVIDVS
LDIPLESAELGSETFEKGQYDAWSTSATRNSAAIRGSVSLRWLKDHCDLITRSDGSFSGD
ELAMALCRVLLSNKAGDEIAGELLDLVGDTAFEIVQDLLLHRKELVDAIQHGLAILKSEK
MTSSNQPKMPTYGTQVTVQTESERQLDKIRRKEEKRGKRGVDTGNGDIGVDDFSSLLLAS
ERKQPFDDVIGTGEGADSFTVTSLPQGTTRKHMKGYEEVKIPPTPTASLKPNEKLIEIRE
LDEFAQAAFQGYKSLNRVQSRIFQATYYTNENILVCAPTGAGKTNIAMIAVLHEVKQHFR
DGILHKNEFKIVYVAPMKALAAEVTATFSRRLSPLNLVVRELTGDMQLTKNEIEETQMIV
TTPEKWDVITRKSSDMSLSMLVKLIIIDEVHLLNDERGSVIEALVARTLRQVESMQSMIR
IVGLSATLPTYLEVAQFLRVNPETGLFFFDSSYRPVPLAQQYIGISERDYTKKTELFNTL
CYEKVVESIKQGHQALVFVHTRKDTGKTARTLIDLAAKAGELELFSSADHPQFPLIKKDV
SKAKSREVVEFFESGFGIHNAGMIRSDRSLMERLFGDGLLKVLVCTATLAWGVNLPAHTV
VIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITTHDKLAYYLRLLTSQ
LPIESQFLGSLKDNLNAEVALGTVTNVREACAWLGYTYLFIRMKTNPLVYGITWEEVLGD
PSMGAKQRTFIIDAARALDKAKMMRYDEKSGNFYCTELGRIASHFYLQYSSVETYNEMLQ
RHMSESEVITMVAHSSEFENIVVREEEQDELEALARKACPLEIKGGPTDKHGKISILIQV
YISRAPIDSSSLHSDAQYISQSLARIMRALFEICLRRGWSEMSSLLLEYCKAVDRKIWPH
LHPLRQFDKDLSPQILWKLEERNVDLDRLYELEENEIGALIRFSHQGKLVKQYVGYFPYV
NLSAIVSPITRTVLKVDLHITPDFVWKDRYHGMSERWWIIVEDSENDTIYHSELFTLTKK
MARGTPTKISFNVPIFEPHPPQYYIRAISDSWLHAESLFTISFHNLTLPQTQITHTELLD
LKPLPLSALGNKTYEDLYRFSHFNPIQTQAFHVLYHTDNNVLLGAPTGSGKTISAELAML
HLFNTQPDMKVVYIAPLKAIVRERMNDWRKRLVTQLGKKMVEMTGDFTPDLMALLSADII
ISTPEKWDGISRSWHSRSYVMKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTDRSI
RFVGLSTALANARDLADWLGVTDDGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP
AYAAICSHSPNKPVLIFVSSRRQTRLTALDIIQLAASDEKPRQFLSMEDNSLDMVLSQVS
DSNLRHTLQFGIGLHHAGLNDRDRSLVEELFSNNRIQVLVCTSTLAWGVNLPAHLVIIKG
TEYYDGKTKRYIDYDITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVE
SNLREHLHDHINAEIVSGTISNKEEAIIYLTWTYLYRRLVVNPAYYGLEDTETNTLNSYL
SRLVESTFEDLEDSGCIRVDDRSVKYLILGKIASQYYLSYLTVSMFGSNIGPNTSLEAFV
HILSAAAEFDELPVRHNEDNLNRTLSGNVPYPVDQHHLDDPHVKANLLFQAHFSRAGLPI
SDYATDLKSVLDQSIRIIQAMIDVCANSGWLSSALSCMHLLQMIIQGLWFERDSSLWMLP
SMNDDILGHLQGRGVSTVSALLDFSREELHRLLQPFSASELYQDLQHFPRVDVKLQLQNE
QERSKSPTLNIRVQLKNSRRSTSRAFAPRFPKAKQEAWWLVLGNATSSELYGLKRISSAD
RVVNTRMELPQMFNIQETKLILVSDSYLGFDQEYSLEHLTKR
NT seq
6249 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgccgcttccgcgcttgacgagcgcgctccgcgggcacttcgacgccgaccag
gcctacctcctccgcaagaccatcctccaggctctcaccctccccaggccgcatgacgag
tgggagcttgcccggaagatcgtgcccggctgggacgacgcttccagcgaagtgcgccag
gcatataagcaatttatcggtgctgtgggggagatgttgaatggagaggtagtgtctgaa
gaactccgtgaagttgctcagactgcatatgccctgtttggtggcgatgacacggagtac
gatgccccccaaagagcctttgtcaaaaggaatgaattggagaggcttgtgggctatact
gtacaagactcagttctaaagaagctagctcagttagctcagaagctcggttcccttcaa
cgggcaagcgcccatgaatttgcccacaggaaagcagatgatgtagatgaaaatgagaga
agtgaatttggagcagactttgatttcaagccacctgctcgtttcgttattgatgtttct
cttgacatacccttagaaagtgctgaattgggcagtgaaacatttgaaaaagggcagtat
gatgcttggagcacatccgcaactcgtaattcagctgctattaggggttctgtgagtttg
aggtggctgaaagatcactgcgatttgataactagaagtgatggctcgttctcaggagat
gaacttgcaatggccttgtgcagagtgctcctatcaaataaagcaggcgatgagatagct
ggtgagctgttggacctggttggcgacactgcctttgaaatagttcaggatcttcttttg
catagaaaagagctagtagatgcaattcaacatggattggcgatattgaaatctgagaaa
atgacctcaagtaatcaaccaaagatgccaacttatggcacacaggtaactgtacaaaca
gagtctgagcgccaacttgataagattaggaggaaagaggaaaaacgtggcaaacgtggt
gtagacactggcaatggtgatattggtgtagatgatttctcttccctccttttggcaagt
gaaagaaagcagccatttgatgatgtgattggtactggagaaggggcagatagttttaca
gtaacttcccttcctcaaggaaccacaaggaaacacatgaagggctatgaagaagtgaag
attccaccaactccaacggcatcactgaaacccaatgagaagctgattgaaataagagaa
ttagatgagttcgcccaagctgccttccagggatacaagtcactcaatcgtgtgcagagt
cgcattttccaagctacatactacaccaatgagaatattctagtttgtgccccaacaggt
gctgggaaaacaaatattgcaatgattgcagttcttcatgaggttaaacaacactttagg
gatggcattttacataaaaatgagtttaagatagtctatgttgctccaatgaaggcattg
gctgcagaggtaacagcgacattcagtcgccgattatctccattgaacctggtcgttaga
gaacttacaggagatatgcagttgaccaaaaatgagattgaagaaacacagatgatagtg
actactcctgagaagtgggatgtcattacacgcaaaagtagtgacatgtcactttcaatg
ctggttaagctgataatcattgatgaagtgcaccttctaaacgatgaaagaggttcagta
attgaggcactggtagctcggactctccgccaggttgagtctatgcaatcaatgattcgc
attgttggcctatctgctaccctgcctacttacttagaggttgcacaatttttgcgggtt
aatccggagactggccttttcttttttgactcaagttatcgtccagttcctcttgctcag
caatacattgggatcagtgaaagggattacactaagaaaactgaattattcaatactttg
tgctatgagaaggttgtggagtccattaagcaaggtcaccaagcattggtttttgttcat
actcgtaaggacactgggaagactgctagaaccctgatcgacctagctgcaaaagcaggg
gagttggaattattttcaagcgcagatcatccccagtttccattaatcaagaaagatgtt
agtaaagcaaaaagtcgtgaagttgttgaatttttcgaatctggatttggcatacacaat
gctggaatgatacgttctgacagaagtttgatggagcgcttgtttggtgacgggcttttg
aaagtccttgtttgtacagcaacattggcttggggagtaaacttaccagctcacacagtt
gttataaagggcacacagctatatgatcctaaagctggtgggtggcgagatctggggatg
cttgatgtgatgcagatctttggacgtgctggaaggccacagttcgacaaaagtggcgaa
ggaattatcatcacaacacatgacaaattggcttattacttaaggttattgacaagccag
cttccaatagagagccagttccttggatctctgaaagataatttaaatgctgaggttgcc
ttgggcacggtaacaaatgtcagggaggcctgtgcctggcttggctatacatacttattt
ataaggatgaaaactaatcctctggtttatggaataacttgggaagaggttttgggagat
ccttctatgggcgcgaaacaaagaacattcattattgatgctgcacgcgcactagacaaa
gctaagatgatgcgctatgatgaaaagagtggcaacttttactgcacagaacttggtcga
attgcaagccacttttaccttcagtactccagtgttgagacttacaatgagatgcttcaa
cgtcacatgagtgaaagtgaggtgattactatggtcgcccattcctctgaatttgaaaat
attgttgtgagagaagaagaacaggatgaattagaagcccttgctaggaaagcatgcccc
ttggaaattaagggtgggccgactgacaaacatgggaaaatttcaattctcatacaggtt
tatatttcccgtgctccaattgatagctcctctttacattctgatgctcaatacattagt
caaagtttggctcgcattatgagggcactatttgagatttgtctgcgtcgggggtggtct
gagatgtcatccttattactagaatattgcaaggccgtggaccgcaaaatatggcctcat
ctccatccacttaggcagtttgataaggatctttctcctcagatattgtggaaacttgag
gaaagaaatgttgatctggatcgtctttatgagttggaggaaaatgaaattggtgcactg
atccgattttctcaccagggaaagctggttaagcaatatgttggatacttcccatatgtc
aacttatctgcaattgtgagcccaatcactaggacggttcttaaagttgacctgcatata
acgcctgattttgtgtggaaagatcgttatcatggcatgtcagaacgatggtggattatt
gttgaggattctgaaaatgacaccatctatcactctgagctattcacactgacgaagaag
atggcaagaggaacacccacaaagatatcttttaatgtaccaatatttgaacctcaccca
ccacagtactatatacgagccatatcagactcatggttacatgctgagtcactctttact
atttcttttcataatctgacattaccacagacacaaataacgcacactgaacttttggac
ttgaagcctcttccgctgagtgctcttggcaacaaaacatatgaggatctctacagattt
tcacatttcaatccgatacaaactcaggcttttcatgttctttatcacacggataataat
gtacttttgggagctccaactggaagtggaaagacaatttcggcagaactagcaatgctt
catcttttcaatactcaaccagacatgaaggtagtttacattgcccctctaaaggctata
gtgagagaaagaatgaatgattggagaaaacgtcttgtaactcagctcgggaagaaaatg
gttgagatgactggtgacttcactccagatttgatggccctattatcagctgacatcata
atttctacccctgaaaaatgggatgggattagtcgaagttggcatagcagaagctatgtt
atgaaggtggggctcatgatattggatgagatacatcttttgggagctgaccgtggaccc
atccttgaggtcattgtatcaagaatgcgatatatatcgtcacaaacagatcgttcaatt
cggtttgtcggtttatcaacagcattagcaaatgctcgtgatttagctgattggttgggc
gttacggatgacggtctattcaatttcaagcctagtgtgaggcctgtacctcttgaagtg
catatccagggatatcctgggaaattctactgtccgagaatgaatagtatgaacaaacca
gcttatgcagccatatgctctcattcacccaataaacctgttctcatttttgtgtcatca
cgtcgacagacaagacttacagcccttgatatcattcagcttgcagcgtcagatgaaaaa
ccaaggcagttcctgagcatggaggacaactccctagacatggttctttcacaagtttct
gatagtaatttgaggcatactcttcagtttggcattggtctgcatcatgcaggtttaaat
gacagagacagatccttggttgaggaactcttttcaaacaataggattcaggtactggta
tgtaccagcacgttggcatggggtgtcaatcttccagctcatctggtcataatcaagggc
actgaatactatgatggcaaaacaaaaagatacatcgattatgatatcacagatattctg
caaatgatgggtcgtgctggtcgaccacaatacgaccaacatggcaaagctgttattctt
gtccatgaaccaaaaaagagcttttacaagaagttcctctacgaaccatttcctgtggag
agtaatctgagggagcacttgcacgatcacataaatgcagaaattgtttctggcaccatc
agcaacaaggaggaagcgattatttatctcacttggacttacctatatcgcagattggtt
gttaatccagcctactatggattggaggatactgaaacaaataccttgaattcttatctc
tcaaggttagtcgaaagtacatttgaagatcttgaggacagtggatgcataagagtagat
gaccgctctgtaaagtacttgattttgggaaaaatagcatcgcagtattaccttagctac
ctcactgtttcaatgtttgggtcaaatattggccccaatacatcattggaagcctttgtg
cacatactgtcggctgctgcagaatttgatgagcttcctgtacgccacaatgaggataac
ttgaatcgaacactcagtggaaatgtcccatatccagttgatcaacaccaccttgatgat
ccacatgttaaagccaacttactctttcaggcacatttctcaagagctggattaccaatt
agcgattacgccacagacttgaaatcagttcttgatcagagcatacgtattatacaggca
atgattgacgtatgtgccaatagtggatggctttcaagtgcattgtcttgcatgcatctc
ttgcagatgatcatacagggtctctggtttgagagggactcatcactctggatgttgcca
tccatgaatgatgatattctaggtcatctccagggtagaggagtctcaacagtctcagcc
ttgctggatttttctcgtgaagaattgcacaggctccttcaaccattttctgcatcagag
ttgtaccaggatctgcaacatttccctcgtgttgatgtgaaacttcagcttcagaatgaa
caagagcggtccaaatctccaactttaaacatcagagtacaattgaaaaattcacggcgt
tcaacatcaagagcatttgcccctagatttcccaaggcaaaacaagaagcttggtggctg
gtcctggggaatgctacaagctcagagctgtatggtctaaaaagaataagttctgcagat
cgggtggttaacactcgcatggaattgccacagatgttcaatatccaggagacgaaactg
attttggtgtcagattcctacctaggttttgaccaggagtactctcttgagcatctcacc
aagcgttga
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integrated database retrieval system
