Panicum hallii (Hall's panicgrass): 112874426
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Entry
112874426 CDS
T07366
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2 isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112874426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112874426
Enzymes [BR:
phai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112874426
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
112874426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
112874426
NCBI-ProteinID:
XP_025793524
LinkDB
All DBs
Position
9:13243299..13256699
Genome browser
AA seq
1182 aa
AA seq
DB search
MDKATKSASPAGAKEGDYAALRELFRPHVESFDYFLDAGLEEMLSSIRPMEIKDPNSSTI
LKITLEKGHVLPPMRDGRLGVPLYPQECRQARITYHGEFKVDVCLQCNEEGAQIRHTFNF
GHLPIMLMSKLCHLRDADPHKLVFHGEESTEMGGYFICGGMERLIRILILQKRNYPMGMV
RGSFLKRGAGYTDKAVVIRCVHTDQSSVTIKLYYLQNGSARLGFWLGGREFLLPVGIVLK
ALIDTSDREIFTSLTCCYSDKYGRRKGVVSTQLIGERAQIILDEVRDLSLLTRMQCLMHI
GKYFRSVMEGFEHYDYETVAKAVLKDYIFVHLENNHDKFNLLIFMLQKLYAIVDQTASPD
NPDALQFQEALLPGHLITIFLKDRLQDWLRKSKRLIIEEATKNKSFDLNNALEVRKFLTK
HTTSVGRAIESMIKIGKVNSQSGLDLPQRDGMTIHAERLNFHRYISHFRSVHRGAAFAKM
RTTAVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGVVKDFEKIKKSLS
AELVRVGMNPVFPRIERSGPPEVLHVHLDGCILGTISSARIEETVNFLRKLKLLAHSGIP
EDLEVGYIPLSLGGAYPGLYLFTNPARFVRPVKNLFIVPGGKQSIELIGPFEQAFMEIRC
PDGGDGGRKEMFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQA
LKFRTDVKAFHLQTPQTPIVRTATYNKYCMDEFPSGTNAIVAVLAYTGYDMEDAMILNKS
AVDRGMFRGHIYQTECIDLSKKNRENVPEIFAKSVLSRDTSTAIDSDGLPRLGQTVHPNE
QYYSVYNRLTGAIRPVKLKGSEPAYIDYVAVNGASSKGDFQKANIRLRRVRNPIIGDKFS
SRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLESMAAKAGSLHGK
FIDATPFSSSVKKEGKHPRKSDSIVDELGPMLASYGFGYHGTETLYSGFFGTEMECAIFI
GPVYYQRLRHMVSDKFQVRTTGRIDQVTRQPIGGRKHGGGIRFGEMERDALLAHGSSYLL
HDRLHSCSDYHIADVCSFCGSLLTATVIKSDTQKKDKREMLGLPTVKLAKNLVCQACKTS
KGMETVAMPYVFRYLAAELAAMNIKLELRLSNKSELPPSQGS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggacaaggcgacgaagtcggcgtcgccggcgggagccaaggaaggcgactacgcggcg
ctgcgggagctgttccggccgcacgtggaatcgttcgactacttcctcgatgcggggctg
gaagagatgctcagcagcatccgccccatggagatcaaggaccccaactccagcacaatc
ctaaaaataaccttggagaaaggtcatgtgctgccgccaatgagggatggtcggttgggt
gtacccctctacccccaggagtgcaggcaagcaagaattacatatcatggggaatttaaa
gtggacgtctgcctccagtgtaatgaagaaggggcacaaatcaggcataccttcaatttt
ggccatctgcctattatgttgatgtcaaaattgtgccatctgagagatgctgatccacat
aaattagttttccatggtgaagaatcaaccgaaatgggcgggtacttcatatgtggcggg
atggagagacttataaggattcttatattacaaaagcgtaactatcctatgggcatggtg
cgtggttcttttcttaaacgtggtgctggatacactgacaaagcagttgtcataagatgt
gtccatacagaccagtccagtgtgacaataaagttgtattacctccaaaatggaagtgca
aggcttgggttttggttggggggtagagagtttctgcttcctgttgggattgtcctcaag
gcccttattgatacgagtgaccgggaaatctttacaagcttgacatgctgctacagtgat
aaatatggaagaagaaagggtgttgttagtacgcaactaattggtgaaagggcacaaata
attcttgacgaagtcagagacctgtcccttttgactcgcatgcaatgcttgatgcatatt
ggaaagtacttccgatctgtgatggaaggatttgaacattatgactatgaaactgttgct
aaagcggttctgaaggactatatttttgtgcacctggaaaacaaccatgataaatttaat
ctattgatatttatgctgcagaaactttatgccatcgtagaccaaactgcttcgcctgac
aatcctgacgcactacaattccaggaggctctcttgcctgggcacttaatcacaattttt
ctgaaggatagacttcaggattggctaagaaagtctaaacgtttaatcattgaagaggct
acaaagaacaaaagttttgatctcaacaacgcattggaagtaagaaaatttcttactaaa
cacacaacatctgttggtagagctatcgagagtatgataaagattgggaaagtgaattca
caatcaggattggatcttccacagagagatgggatgaccattcatgctgaacggctcaac
tttcatcgttatatttcacacttccgttctgttcataggggtgctgcttttgctaaaatg
cgcacaacagctgttagaaagttacttccagagtcctggggtttcctttgtccagttcat
acacctgatggagagccttgtggtttattgaaccatatgacttccacatgccgtatttca
tcgttctacaattcagaaggggtggttaaagattttgagaaaataaagaagtcactctct
gctgagttggttcgtgttggaatgaacccagtgtttcctaggattgaacgatctggtccc
ccggaagtactacatgtacatttggatggatgtattcttggtacaatttcttctgctaga
attgaggaaacagttaattttcttcggaagttgaaacttctggcacactctgggattccg
gaagatctggaagttggctacattcctcttagtcttggtggagcttatcctggcctttac
ctttttacaaacccagcaagatttgttcgacctgtcaaaaatctttttattgtacctggt
ggaaagcaaagtattgagcttattggaccatttgaacaggcatttatggagatacggtgt
cctgatggtggggatggtgggagaaaagaaatgtttcctgcaactcatgaagaaatccac
cctactgctattcttagtgtagttgccaatctgacaccttggtctgatcacaaccaaagt
cctaggaacatgtaccaatgccagatggcaaagcaaaccatgggtttttgtggacaagct
ctaaaattccgtactgatgtaaaagcattccacctacagacccctcagacaccaattgtt
cggacagctacatataataaatattgtatggatgaatttccatcaggaacgaatgctatt
gttgcagtgctagcatacacaggttatgacatggaggatgccatgatactgaataaatca
gctgttgatcgtggaatgttccgtggacatatttaccagaccgaatgcattgacttatcc
aagaaaaacagagaaaatgttccagaaatctttgcaaagagtgtattatctagggataca
agcacagctattgattcagatggccttcctcggcttggacagacagtacatccaaatgag
cagtactatagtgtctataacagactcacaggcgctataaggcctgtcaaactaaaaggc
tcggagccagcgtatattgactatgttgctgtcaatggggcaagttcgaaaggtgacttt
cagaaggcgaacattcgtctgcgtcgtgtaagaaaccccataattggtgacaaattcagc
agcagacatgggcaaaagggtgtttgctctcagttgtggcctgacattgacatgccattc
tctgcaaatactggcatgagaccagatcttatcattaaccctcatgcatttccttcaaga
atgactatagcaatgctcttggagtctatggcagcaaaggctggaagtctgcatggaaag
ttcattgatgccacacctttttcaagctctgtcaaaaaggagggcaagcatccccgtaaa
tctgattctattgtggatgaactgggtcccatgcttgcatcttatgggtttggttatcat
ggaacagagaccctttatagtggattttttggaactgagatggagtgtgcgattttcatt
ggacctgtttattaccagcgtcttaggcatatggtctcagataaattccaggtccgcact
actggtcgtatagaccaggtgacaagacaacccattggaggaaggaagcatggcggaggg
atccggtttggtgagatggagcgcgacgcgctcctcgcccacgggtcttcctacctcttg
cacgacaggctccactcctgctcggactaccacattgcggacgtgtgctccttctgcggg
agcctactgaccgcgacggtgatcaaatccgacacgcagaagaaagacaagcgcgagatg
ctcgggctacccacggtgaagctggcgaagaacttagtgtgccaggcctgcaaaacgagc
aaggggatggagaccgtggcgatgccatacgtgttcaggtacctggcggccgagctggcc
gccatgaacataaagctggagctccggctgagcaacaaatcagaattgcctcccagccaa
ggatcatga
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