Panicum hallii (Hall's panicgrass): 112874468
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Entry
112874468 CDS
T07366
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
phai03015
mRNA surveillance pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112874468
09122 Translation
03013 Nucleocytoplasmic transport
112874468
03015 mRNA surveillance pathway
112874468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112874468
03041 Spliceosome [BR:
phai03041
]
112874468
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112874468
Spliceosome [BR:
phai03041
]
Complex C
Other components
EJC/TREX
112874468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
112874468
NCBI-ProteinID:
XP_025793579
LinkDB
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Position
9:60947080..60952008
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AA seq
698 aa
AA seq
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MSSYPVLNNRPIDQWRVTDLKDELRKRRLPVKGLKEELVRRLFESIQSEKSADEDVGANA
DDQLPDANASEQTTVTITEVCHETVVHVSQQVEVPTPSVDVEASLNETSAAKGEEPESIA
GGNLAFEEVQPHTESNNEPVLEKTSDADTNDAVIVNDAISTEVNSDLATSEVKSDATKAT
KIQEQDSAPAPADASHMDTDVVTAAPVSNDGEKLAPMDDLGDKVPMYDEEHKDSDIMNED
REPIVSKPNNQVPEVSLDLGSQIKCESISSDLSTNKKNNIEDNLNANNFDLELEVKPKMV
EPSSGITSLGGDLQQLDDDKELVKNQSYVEGIDSTANVDSYKKDSPEGSPEKLNLDRSSG
DESMEEDVMEIKQVESNMKSDEKTELNSEDVKEVTLPDSAVEASSVDTKEVIAEEKSAAS
TEKRKLEAEEVVANTEPIKRQRRWTSDGAKVPERQTLSQTVSDAPKDVFQPALKRSFGRS
DSMASVDSPKERIVPPSQKPATTSLRIDRFVRPFTLKAVQELLGKTGSVQIFWMDHIKTH
CYVTFSSVDEAVATRDAVYNLQWPPNNGNKLIAEFVDPQEVKLKIEPPPPPAAPVSPAAA
ARVPPVQQALANQNVPRQAAAPKEQLPPPPPLAKPPTVDPAASARERLPPTPKKPEPPVV
TLDDLFRKTQSSPRIYYLPLSEEEVAAKLAAQGKGKKE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatatcctgtgctaaacaaccgaccaattgatcagtggagagttactgatctg
aaggatgaactccgtaaaagaagacttcctgtcaagggtttgaaagaggaacttgtgagg
cgactctttgaatccattcagagtgaaaaatcagctgatgaagatgtgggagcgaatgca
gatgatcagttgcctgatgccaatgctagtgaacaaactacagttaccatcacagaagtt
tgtcatgaaacagtggttcatgtcagtcagcaagttgaagttcctacccccagtgttgat
gttgaagcttccttaaatgagacctcagctgccaaaggagaagagccagaatcaattgct
ggaggaaatttagctttcgaagaagtgcaaccgcatactgaaagtaataatgagcctgtt
cttgagaagacctcagatgctgacaccaatgatgcagtcattgtcaatgatgcaatcagt
actgaagtgaactcggacttggccacttctgaagtcaagtctgatgccactaaagcaacc
aaaattcaagaacaggattcagcaccagcacctgcagatgctagccatatggataccgat
gttgtcacagctgcaccagtaagcaatgatggcgagaaactggcacccatggatgatttg
ggtgacaaagtgccaatgtatgatgaagaacacaaagattctgatatcatgaacgaggac
cgcgagcccatcgtgtcaaaaccaaataatcaggtacctgaggttagcctagatttaggg
tctcaaattaagtgtgagtcgatttctagtgatctatcaactaacaaaaagaataatata
gaagataacttgaatgctaataattttgatttagaactagaggttaagccgaagatggtt
gaaccatcatccggcattacttccttaggtggagatttgcagcaattggatgatgacaaa
gagctggttaagaaccagtcatatgttgaaggcatagattccaccgctaatgtggactca
tacaagaaagatagtcctgaaggttctccagagaaattaaatttagacaggagttcaggt
gatgagtcaatggaggaggatgttatggaaattaaacaagttgagtccaatatgaaatct
gatgaaaagactgagcttaactcagaagatgtgaaagaggtgaccctccctgattctgct
gttgaggcttcctctgttgataccaaggaggttatagctgaagaaaagtcggcagcttca
acagaaaagaggaaactcgaagctgaagaagttgttgcaaacactgaaccaatcaagcgg
cagcgccgatggacttcagatggtgccaaagttccagaaagacaaacattgagtcaaact
gtttctgatgctcccaaggatgtttttcagcctgctctgaaacgatcttttgggaggtct
gattcaatggcgagtgtagattctcctaaggagaggattgtgccaccgtctcagaaacct
gcaacaacttctttgagaattgaccgatttgtacgcccatttactctgaaagctgtgcag
gagcttcttggtaaaactggatcagtacaaatcttctggatggatcatatcaagactcat
tgctatgttacattttcctcggttgatgaagctgtggctactagggatgctgtttacaac
ctacagtggcccccaaacaatggcaataagttgattgccgaatttgttgatcctcaggaa
gtgaagctcaagattgaacctcctcccccaccagcagctcctgttagtccagcagctgct
gcaagggtgcctcctgttcaacaggctctggctaatcaaaatgtgccacgccaagctgct
gcaccgaaggagcaactgccacctccaccgccccttgctaagccccctacagttgaccca
gcggcatcagcaagggagaggcttccacccactccgaagaagccagagcctcctgttgtg
acacttgatgatctcttcaggaagacacagtcgtccccaaggatctactatctgcctttg
tcagaagaggaggtggcagccaagctcgctgcacaagggaaagggaaaaaggaatag
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