Panicum hallii (Hall's panicgrass): 112874484
Help
Entry
112874484 CDS
T07366
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112874484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112874484
03012 Translation factors [BR:
phai03012
]
112874484
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112874484
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112874484
Translation factors [BR:
phai03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112874484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
NACHT
AAA_19
ABC_tran
Motif
Other DBs
NCBI-GeneID:
112874484
NCBI-ProteinID:
XP_025793603
LinkDB
All DBs
Position
9:14770771..14783854
Genome browser
AA seq
1031 aa
AA seq
DB search
MLLHSSACRGSHVLLASCSNISGRFLHFPSASTPLKTLGALRTLAAMSYRGGRGGGGPNS
HRGGGRGGGRGGRGGGGRGEERWWDPQWRAERLRQKQREVENVDENEWWNRIRQLREGTQ
QELVVKQRNFGRDGQNILADMAHRQGLYFNAYNKGKALVFSKVPLPDYRADLDERHGSTQ
KEIKMSNQIERRVEDLLSRSKLSTNDSASSSNVSMKALPSASSSVERPADIDKEKLSSQL
RDLQNSRKMTPSARSMQSFREKLPAFNMREGFLKAVAANQVLVISGETGCGKTTQLPQFI
LEEEIDNLRGADCSIICTQPRRISAISVAARVASERGEELGETVGYQIRLESKRSAQTRL
LFCTTGVLLRRLVQEPDLVGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLVLMSA
TINAELFSKYFGDAPIMHIPGFTFPVTEFFLEDVLEKTRYKIKSERDSSAGSSRKKRLSS
VKSDPLSDLFEDIDIDKEYGNYSITTRQSLEAWSAAELDLSLVENTIEYICRYEAEGAIL
VFLTGWDEISKLLDKIKGNTFLGSSNRFLVLPLHGSMPTVNQREIFDRPPTNMRKIVLAT
NIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASTHQRRGRAGRVQPGFC
YRLYPKVIHDAMPQFQLPEILRTPLQELCLTIKSLQLGAVSSFLAKSLQPPDPLSVKNAI
ELLKTIGALDDMEELTSLGRHLCTLPLDPNLGKMLLMGSVFQCLDPVLTIAAALAYRNPF
VLPIDRKEEADAVKRSFAGDSCSDHIALLKAFVAWKEAKRSGRERSFCWENFLSPMTLKM
MDDMRNQFFDLLSDIGFVSKTRGVKAYNQYGSDLEVVRAVLCAGLYPNVVQCKRRGKRTA
FYTKDVGKVDIHPSSVNAFVNQFPLPYLVYSEKVKTASIYVRDSTNISDYALLLFGGSLS
PNKTGEGIEMLGGYLHFSAQKRTIELIQRLRGELDKLLQRRIEEPGLDIFSEGKGVVAAA
VELLHSQNVYH
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgctgctccactcttccgcctgccgcggcagccacgtcctcctcgcctcctgtagcaac
atcagcggccggttcctccacttcccttccgcgtccacccctctcaaaaccctaggtgca
ctcaggacccttgccgccatgtcgtatcgcggcgggcgcgggggtggcgggcccaactcc
caccgcgggggcggccgcggcggcggcaggggaggccgcggcggcggcgggcgtggggag
gagaggtggtgggacccgcagtggcgcgcggagcggctccggcagaagcaacgggaggtg
gaaaacgtcgatgagaatgaatggtggaacaggatcagacaattaagagaagggacccaa
caggagctagtagtcaagcagcggaattttggacgggatggacagaacatacttgcagac
atggctcatagacaagggctttactttaatgcatacaacaaggggaaggcactggtattc
agtaaggtgccattacctgattatcgagcagatcttgatgagaggcatggatcaactcaa
aaagagattaagatgtctaatcagatagagaggcgagtggaagaccttttgtccaggtca
aagttgagtaccaatgattctgcaagctcatctaatgtatcgatgaaagctttgcctagc
gcatcctcatcagttgaacgaccagcagatattgataaagaaaagctcagctctcagctt
agggatttgcagaattcaaggaagatgacgccaagtgctagatcaatgcagtctttcagg
gagaaattacctgcattcaatatgagagaagggtttctgaaagcagtagcagctaatcag
gttctggtcatatctggtgagacaggttgtggtaaaacaacccagcttccacagttcatt
ctggaagaagaaatagataacctccgtggtgctgattgcagcataatctgtactcagccc
cgccgtatatctgccatatcagtagcagcaagagtagcttctgagagaggtgaagagctc
ggtgagactgttgggtaccagattcgcctagaatcaaaacggtctgcacaaacacgactg
ctgttctgcactactggagttttgcttagaagactggttcaagagcccgacttagttggc
gtaagtcatttactagttgatgaaattcatgaacgtggcatgaacgaagattttctcatc
ataatactgcgtgaccttctaccaagacgtccagaccttcgccttgtattgatgagtgca
actataaatgcagaactgttttccaagtacttcggagatgctccaataatgcacatcccg
ggtttcacctttcctgttactgagttttttctggaagatgtcttagaaaagactcgttac
aaaatcaagtccgaacgtgatagttctgcaggtagttcgagaaaaaagaggctttcatca
gttaagagtgatccattatctgatctgtttgaggacattgacattgataaggaatatgga
aattacagcattacaacaaggcagtcccttgaagcttggtctgctgctgaactagatttg
agcctggtagaaaatacaattgagtatatttgtcgctatgaagcagaaggtgcaattctt
gtcttccttaccggctgggatgaaatttcaaaacttctggacaaaattaaagggaatact
ttccttggaagttcaaacagattccttgttcttcctttgcatggttctatgccaactgtc
aatcagcgtgaaatttttgacagaccgccaactaatatgagaaaaattgttctggcaacc
aatattgcggagagtagtatcactatagatgatgttgtctatgtaattgattgtggtaag
gcaaaggaaacaagttatgatgccttgaacaagcttgcatgccttctaccatcatggata
tcaaaagcttctactcatcagaggcgaggtcgtgcaggccgcgttcagccagggttttgt
tataggctttatccaaaagtcattcatgatgcaatgccacagtttcaattgcctgaaatt
cttaggactcctttgcaagaactatgccttactatcaaaagcttacagcttggagcagta
tcctcctttttggcaaaatcactgcaacctcctgatcctctttctgtcaagaatgcaatt
gagcttcttaaaaccattggcgcactcgatgatatggaggaactcacttctctaggacga
catctctgtacacttccactggatccaaaccttggaaaaatgctgctcatgggatctgta
ttccagtgcctggacccagtattaacaattgctgctgctcttgcataccgtaatccattt
gtgctcccaattgatagaaaagaagaagctgatgctgttaaaagatcatttgctggtgac
tcctgcagtgatcacattgctcttcttaaggcgtttgtagcatggaaggaagcaaaacgt
agtggcagagaacgttctttctgttgggaaaactttttgtcccccatgaccctgaagatg
atggatgacatgcgaaatcaattctttgatctactatctgatattgggtttgttagcaag
acaagaggagtgaaggcatataaccagtatggcagcgatctcgaggtggtccgtgctgtc
ttgtgtgctgggctttacccgaatgttgtacaatgtaaaaggcgaggaaagaggacggct
ttctacaccaaagatgtgggaaaagtggacattcatccttcatcagtgaatgcatttgtg
aaccaattcccgttgccttacttggtttacagtgagaaggttaagacggctagcatttat
gtgagggactccacaaatatatcagactatgcccttttactttttggtggttcccttagt
ccaaacaaaactggagaaggcattgagatgctcgggggttatcttcatttctcggcccaa
aagcgtacaatagagttgattcagagattaagaggtgaattggataaactcctccagagg
aggattgaggaacctggacttgacatcttttcagaaggaaagggtgttgtcgcggcagct
gtagaacttttgcacagtcaaaatgtgtaccactag
DBGET
integrated database retrieval system
