Panicum hallii (Hall's panicgrass): 112874485
Help
Entry
112874485 CDS
T07366
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03020
RNA polymerase
phai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112874485
09124 Replication and repair
03420 Nucleotide excision repair
112874485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112874485
03400 DNA repair and recombination proteins [BR:
phai03400
]
112874485
Enzymes [BR:
phai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112874485
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112874485
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112874485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
112874485
NCBI-ProteinID:
XP_025793604
LinkDB
All DBs
Position
9:complement(9361483..9369388)
Genome browser
AA seq
1230 aa
AA seq
DB search
MEDDEYEEGMEMGYGGHHQHRGGHAGYAEDEDEVGYGGGDADEMDEDGDGDGDAEQRDEE
EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQA
EFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGH
DCEEVTETSDYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKV
LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQ
YIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQ
QVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLM
CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFA
IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL
AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEE
ISPAVIPQAAKIFVNGCWVGIHRNADLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYT
DYGRCSRPLFIVENQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETTMIS
MTINDLINARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDG
LAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNAD
GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS
RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
KLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
AHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
KLLFQELMAMAIAPRMLTHDIKTGKDQKKR
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacgagtacgaggaggggatggagatgggttacggcggccaccaccagcac
cgcggcggccacgcggggtacgcggaggatgaggatgaggtggggtacggcggcggggac
gcggacgagatggacgaggacggggacggggacggggatgccgagcagcgggacgaggag
gagatcactcaggaggacgcctgggccgtcatctccgcctacttcgaggagaagggactc
gtgcgccagcagctcgactccttcgacgagttcatccagaacaccatgcaggagattgtc
gacgagtccgccgatatcgagatccgccccgagtcgcagcacaaccccggccgccaggcc
gagttcgccgagactctgcacaagatcagctttggtcaaatctacctcagcaagccaatg
atgacagaggctgatggagagacagctactttgtttccaaaatcggcaaggctcaggaac
ctaacatactctgcgccactgtatgttgatgtatcatacagagtaatgaagaaaggacat
gactgtgaggaagttacagagacttcagattatccaaaagtgttcatcgggaaggttcca
atcatgttgcgttctagttactgcacactatatcaacaatctgagaaggatctgactgaa
cttggggagtgtccttatgaccaaggcggttatttcattatcaatggaagcgaaaaggtt
cttattgcccaggagaagatgagcaccaaccatgtctatgtttttaagaagaggcagcct
aataaatatgcatatgtggctgaagtccgttctatggctgagaaccagaacaggccagcc
agcagcatgtttgtacggatgctttcacgagcaggagcaaaagggggttcatccggtcaa
tatatccgtgctactctgccctatattcgtgcagacattcccattatcattgtttttcga
gcattagggtttgttgctgacaaagatattctggagcacatatgttatgacttctcagat
acacaaatgatggagttgctacgcccatccctggaggaagcttttgtcattcaaaatcaa
caggttgctctggattatatcggaaagcgtggcgctacagttggtgtcactcgagaaaag
agaattaagtatgcaaaagaaatacttcaaaaggaaatgttgcctcatgttggtgttggt
gaattctgtgaaactaagaaggcatactattttggatacattattcaccgcctactgatg
tgcgctcttggtcgaagagctgaggatgaccgggatcattatggcaacaaaaggctagat
cttgctggtccattgcttggtggactgtttagaatgcttttcaggaagttaacaagagat
gtcagatcttatgtgcaaaagtgtgtggataatggaaaggaagttaatttgcaatttgct
ataaaagcaaaaactattaccagtggcttgaagtattcccttgctactggaaactgggga
caggctaaccaagctggaaccagagcgggggtttctcaggtgcttaatcgcctgacctat
gcttctacactatcacatctccggaggctgaactcccccattgggcgtgaaggtaaattg
gcaaaaccccgccagttgcataattctcattggggaatgatgtgtcctgctgaaacacca
gaaggacaagcttgtggcttggttaaaaatcttgccttgatggtatatattactgttggt
tctgctgcaaatccaattttggaatttttggaggagtggggcacagaaaattttgaggag
atatcaccggccgtcattccgcaggctgctaagatttttgtcaatggttgctgggttgga
attcataggaatgctgacttgttggtgaagactcttcggcgtctaagaagacagattgat
gtcaacactgaagttggtgtggttcgtgatattcgtcttaaagaacttagactctacacg
gattatggtcgctgcagtcgtccgttgtttattgttgagaaccagagattgctcatcaag
aaggcgcatatccgagcattacagcaaagggagactcctgatgaaggttggcacgaatta
gtctcaaaaggatatatagagtacatagatactgaagaagaggagactaccatgatttcc
atgaccataaatgaccttataaatgcaagacagaacccagaggaggcgtattctgaaaca
tacacacattgtgagattcatccttcattgatacttggtgtttgtgcgtcaattattcct
tttcctgatcacaaccagtcacctcgtaatacatatcagtctgctatgggaaagcaagcc
atgggaatttatgtcaccaactaccagttaagaatggacacattggcctacgttctatac
tacccacaaaagcctttagttactacacgtgctatggaacatttgcacttcagacaatta
ccagcgggcattaatgcaattgttgccattgcctgctactctggttataaccaagaagat
tcagttattatgaatcaatcttccatagatcgtgggttcttccgatcactgtttttccgc
tcttacagagatgaggagaagaagatggggacacttgtcaaagaggaatttggtcgccca
aatagggagaataccatgggaatgcgccatgggtcatatgataaactagatgatgatggc
cttgcaccaccaggaacaagggtctctggtgaagacgttattattgggaagacatctcct
attccacaagatgacgctcaagggcaagcttctaggtactcgaaacgcgatcatagtact
tctctgcgtcacagtgaaagtggcatggtagatcaggttctgttaacaacaaatgctgat
ggtctaagatttgtcaaggttagaatgcgatcagttcgcataccacaaattggagacaag
tttagcagtaggcatggacaaaaaggaactgttgggatgacttacacacaagaggacatg
ccatggacaattgaaggcatcacacctgatattattgtgaatccacatgctattccatcc
cgtatgactattggacagctgattgagtgtattatgggtaaagttgcagctcacatgggg
aaggaaggagatgcaactccatttactgatgttactgtggataacatcagcaaagctctt
cataaatgtggttatcaaatgcgtggatttgagaccatgtacaatggtcacactggaagg
aaactgacagctatgatttttctgggtcccacatattaccaaagactcaagcacatggtg
gacgacaagatacattcaagaggtcgtggtcctgttcagatactcacccggcaaccagca
gaggggcgttcacgtgatggtggtctccgctttggagaaatggaaagggattgcatgatt
gcacatggagcagctttctttctgaaggaaaggctgtttgaccagagtgatgcatacaga
gtccatgtgtgcgagaaatgtggtctcattgcaatcgccaacctaaagaaaaattcattc
gagtgcaggggctgcaagaacaaaactgacattgtccaagtacacataccctatgcttgt
aagcttctgttccaggagctcatggcgatggccattgctcctagaatgctcacccatgat
atcaagacagggaaggatcagaagaaacggtga
DBGET
integrated database retrieval system
