Panicum hallii (Hall's panicgrass): 112874537
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Entry
112874537 CDS
T07366
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112874537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112874537
03009 Ribosome biogenesis [BR:
phai03009
]
112874537
04131 Membrane trafficking [BR:
phai04131
]
112874537
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phai04147
]
112874537
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
112874537
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
112874537
Membrane trafficking [BR:
phai04131
]
SNARE
SNARE associated proteins
Others
112874537
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112874537
Exosome [BR:
phai04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112874537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_33
AAA_5
AAA_22
CDC48_2
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
Mg_chelatase
AAA_17
ATPase_2
AAA_18
Parvo_NS1
Viral_helicase1
IstB_IS21
ABC_tran
Vps4_C
AAA_lid_PRS2_C
AAA_7
NACHT
NB-ARC
DUF815
TsaE
AAA_24
ResIII
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
112874537
NCBI-ProteinID:
XP_025793694
LinkDB
All DBs
Position
9:complement(15875916..15880500)
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AA seq
810 aa
AA seq
DB search
MASQGEPSASASDPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPETMERLQLF
RGDTVLLKGKKRKDTICIVLADETCEEPKVRMNKVVRQNLRVRLGDVVSVHQCQDVKYGK
RVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAE
YCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSI
GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA
EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSI
DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLELIAKDTHGYVGADLAA
LCTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALGTSNPSALRETVVEVPN
VSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN
ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA
GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEQSR
LQIFKACLRKSPVAKEVDLNALAKYTQGFSGADITEICQRAVKYAIRENIEKDIERERRR
KDNPEAMEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFR
FSEQSATAATTAAADPFASTGAADDDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccaaggggagccgtcggcctccgcttccgatccgaaggggaagaaggactac
tcgacggcgatcctggagaggaagaagtcgccgaaccgcctggtcgttgatgaggccacc
aacgacgacaactccgtcgtcgctctgcacccggaaaccatggagaggctgcagctcttc
cgcggcgataccgtgctccttaagggtaagaagaggaaagatactatttgcattgtcctt
gcggatgaaacctgtgaggaaccaaaggttcggatgaacaaggttgtccgccagaacctg
agggtgaggcttggtgatgtggtttccgtccaccagtgccaggatgtgaaatatgggaag
cgtgtacacattcttccaatcgatgatacagttgaaggcattacagggaacctgtttgac
gccttcttgaaaccatacttcctagaagcataccgtcccgtgaggaaaggagaccttttc
cttgtcaggggtggaatgagaagtgtggagttcaaagtgatagagactgatcctgctgag
tattgcattgttgccccagatactgaaatattttgtgatggggagcctattaagagggag
gatgaggaacgtcttgacgaagttggttatgatgatgtcggaggagtcagaaagcaaatg
gcccaaatcagggagcttgttgagcttcctctgcgccatcctcagcttttcaaatctatt
ggtgtgaagccaccaaagggcatattgctgtacggaccacctggttccgggaagactctt
attgctcgtgcagttgcaaatgagactggagcctttttctttcttatcaatggcccagag
attatgtcaaagctagcaggtgagagtgagagcaatctcaggaaggcatttgaagaagca
gaaaagaatgctccatctatcattttcattgatgaaattgattccattgctcccaagagg
gagaagaccaatggagaagtggagcgtcgtattgtttcacagctactgactcttatggac
ggactcaaagctcgttcccatgttattgttatgggtgctacaaaccgacctaacagcatt
gatcctgctcttcgaagatttggaaggtttgaccgggagattgacattggggttcctgat
gaagttggaaggcttgaggtcctccgcattcacacgaagaacatgaaactagctgaggat
gttaatttggaactcattgccaaggatacccatggatatgttggtgctgatcttgctgct
ctttgcactgaggctgctcttcagtgcattcgtgagaagatggacatcatagatcttgag
gacgagacgatagatgctgagatactcaactcgatggctgttacaaatgaccatttcaag
actgcacttggaacaagcaacccatctgctcttcgtgaaactgttgttgaagttcctaat
gtctcttgggaggatattggtgggctggacaacgtcaagagggagctccaggagactgtt
caatatcctgttgagcacccggagaagttcgagaagtttggcatgtctccatccaaagga
gttctgttctatggccctcctggttgtggtaagaccttgttggccaaggcaattgccaat
gagtgccaggccaacttcatcagtgtcaagggtcctgaattgcttaccatgtggtttggt
gagagtgaagccaacgtccgtgaaattttcgacaaggctcgccaatctgctccctgtgtc
ctcttctttgatgagcttgactcgattgctactcagagaggaagcagtgtaggtgatgct
ggaggtgcagctgatagagtgctcaatcagctattgacagagatggacggcatgaatgct
aagaaaaccgttttcattattggggctacaaacaggcctgatatcattgatccagctttg
cttaggccagggcgtcttgaccagctgatctacattccactgcctgatgagcagtctagg
ctacagatcttcaaggcctgccttaggaagtcccctgtggcgaaggaagtggacttgaac
gctcttgctaagtacacccaagggttcagtggtgcagatatcactgaaatttgccagcgt
gccgtcaaatatgccatcagagagaacattgagaaggatattgagagggaaaggcggaga
aaggacaacccggaggcaatggaggaggatgaagtggatgacattgccgaaatcaaggca
gctcactttgaggagtcgatgaagtacgcacgccgcagtgtcagcgacgcagatatccgc
aagtaccaggcgtttgcccagacgttgcagcagtcccgtgggtttggcagcgagttccgc
ttctcagagcagtcagcgactgccgccaccacagctgcagctgatccttttgcatccact
ggtgcggctgatgatgacgatctatacagctag
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