Panicum hallii (Hall's panicgrass): 112875015
Help
Entry
112875015 CDS
T07366
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112875015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112875015
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112875015
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112875015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Peptidase_M9_N
DUF5646
DUF6514
Motif
Other DBs
NCBI-GeneID:
112875015
NCBI-ProteinID:
XP_025794464
LinkDB
All DBs
Position
9:9082384..9091561
Genome browser
AA seq
864 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVSDLESQIDNFEAEVEGLSIKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVEDLYSTLPMEKVEA
LEDMVSLAPSSLVKGVASVSTSAVLSTKSSVATSSTQPTVSTTSSQSTSQDQTEETVSQE
SNPESTPQTPPSKGGNLGPSVPVVPIAVSTGSVAVSVPAETINSPVRPTVPTTAAAILSS
ATPRSAPESMPAVTSIPANLSSTLKDDDSMSFPPRRPSPAITEIGIGRGIARGITSQTLG
TAPISIGPVPGNGSVSALPAINDLSKRNLLNTDERINSGGLSQQLVSPLGNKVQPQQVPR
TNDAISSDSPSTNENPIIGGRVFSPPIVSGAQWRPQTAGAFQNQSETSQFRGRPEISADQ
REKYLQRYHQVQQQQGSLINVSNIAGINQKQFPTQQPNPLLQQFNSQSSSISSQVNLGLG
AQVSDAGHVKSEEQQQSLAEDVGVESAATTGANKQTSEDDTKIPYPNPAAPAAENSQLPR
ETDLLPGQPLQPGMSSSGVGVIGRRSMSDLGAIGDNLTGTSASSGHDQLYNLQMLEAAFH
RLPQPKDSERAKNYVPRHPAVTPASYPQIQAPIVSNPTFWERIGSDTLATDMLFFAFYYQ
QNTYQQYLAAKELKKQSWRFHRRYNTWFQRHVEPQVTTDEYERGSYVYFDFHVTEDGSGW
CQRIKNDFTFEYNYLEDELSVQAN
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagtcggaagctgcagggcgagatcgaccgtgtcctcaagaaggtccaggag
ggtgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgcgaaccag
aaggagaagttcgaggcggacctcaagaaggagatcaagaagttgcagcggtaccgggac
cagatcaagacgtggatccaatccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctgatggatgcccggaagcagattgaacgagagatggaacggtttaaagtt
tgtgagaaggaaacaaaaaccaaggccttctcaaaagaagggttaggtcagcaaccaaaa
actgatcccaaagagaaggccaaagctgaaacgagggactggcttaataatgtggttagt
gatttggaaagccagattgataactttgaagcagaggttgaagggctttcaattaaaaaa
ggaaaacaaagaccgcctcgacttgtacatttagagaagtctattacgcgacataaagct
catataaagaaattggagtcaatcttgagacttttggataacgacgagttgagtcctgag
caagtcaatgatgttaaagattttcttgaagactatgttgaacgtaatcaggaagacttt
gatgaattcagtgacgttgaggatctctatagcacattgcctatggagaaggttgaagca
cttgaagacatggtttcacttgctccttccagtcttgtgaagggtgttgcttctgtttcg
actagtgcagttttgagcacaaagagttcagttgcaacttcatctactcagcctactgta
tcaacaacttcttcacaaagtacatcacaagatcaaacagaggagacagtttcacaagaa
agcaatcctgaatctacaccacaaacaccaccttcaaaaggtggaaatcttggaccttca
gtgccagttgtgccgattgctgtcagtactggtagtgtggctgtttctgtccctgcagaa
acaattaattcccctgtgcggccgactgttcctaccacagcggctgcgatactttcttct
gctactccacgaagtgctccagagagtatgcctgctgtaacctcaattcctgcgaactta
tctagcaccttgaaggatgatgacagcatgagttttcctccacgaagaccgtctccagcc
attactgaaattggaattggcaggggcatagctcgtggaataactagtcagacgttaggt
acagctcccataagtattggtccagtcccaggaaatggatcggtcagtgcacttcctgca
ataaatgacttgtccaaaagaaatctattgaacactgacgagaggattaacagtggtggt
ctttctcaacagttggtttcgcctcttggtaataaagttcaaccacagcaagttcctagg
actaatgatgcaattagctctgattctcctagtacaaatgaaaaccctattattggagga
agagtattttctcctccaattgtttctggggctcaatggaggcctcaaactgctggtgca
tttcaaaatcaaagtgaaactagtcaatttcgtggaaggcccgagatttctgccgaccaa
agggagaagtacctacaaagatatcatcaagtacagcagcagcaaggcagccttattaat
gtttctaatatagctggcataaatcagaagcaatttcctacacagcagccgaatcctctt
ctgcaacagtttaactcacagagttcctctatatcctcccaagtgaaccttgggcttgga
gctcaagtatcagatgctgggcatgtaaaaagtgaagaacaacaacaaagtttggctgaa
gatgttggtgttgaatctgctgcaacaactggagcaaataaacaaacaagtgaagatgac
acaaagattccttatcctaatcctgcagcacctgcagctgaaaacagtcagctgcctagg
gaaactgatctattgcctgggcagcctttgcaacctggaatgtcatcatctggtgttggt
gtcattgggcgaaggagtatgtctgatcttggtgcaatcggggataacctcactggaacc
tcagcaagttctggtcacgatcagctttataatttgcaaatgcttgaagctgcattccat
aggcttccacaacccaaggactccgagcgtgctaaaaattatgttccgcggcatcctgca
gtcacccctgctagttacccccaaattcaggcaccgattgtatcaaatcctaccttttgg
gaaagaattggtagtgacacattggctacggatatgctgttctttgcgttctactatcaa
cagaacacataccaacaatacttggctgctaaagaattgaagaagcaatcatggagattt
cacaggaggtataacacttggttccagcggcatgtggagccacaagttacgactgatgag
tatgagcgaggctcctatgtgtactttgatttccatgtcaccgaagatggctcaggatgg
tgccaaagaatcaagaatgacttcacatttgagtacaactaccttgaggatgagctgtca
gtacaggcaaactag
DBGET
integrated database retrieval system
