Panicum hallii (Hall's panicgrass): 112875048
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Entry
112875048 CDS
T07366
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112875048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112875048
03012 Translation factors [BR:
phai03012
]
112875048
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112875048
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112875048
Translation factors [BR:
phai03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112875048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
ATPase
T2SSE
ABC_tran
AAA_19
AAA_16
NACHT
ATPase_2
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
112875048
NCBI-ProteinID:
XP_025794515
LinkDB
All DBs
Position
9:5041355..5047989
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AA seq
1155 aa
AA seq
DB search
MRRGLRRGLGILLVPLPNAPSRPPPTSLAALLLHPYRLNGFSRRSLCSFPSGGRAVEQFS
DDEYDHEYEDLRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKRM
GLYSEMYGRVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRSLLSLD
KSGGNTRSGSEVAEKADNVNLDEQHDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGFK
MLELRKSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNI
ICTQPRRISAMAVAERVSTERGEGLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSD
RNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGAP
TIHIPGFTHPVRAHFLEDILERSGYRLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTL
VEDALKNSSFETYGSRTRDSLANWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDI
SCLKDQLKAHPLLGDPNRVLLLACHGSMATAEQRLIFEKPPPNVRKVVLATNMAEASITI
NDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVY
DAFADYQLPELLRTPLNSLCLQIKSLQVASIGEFLSAALQPPEPLAVQNAVEFLKMIGAL
DGNENLTDLGRYLSILPVDPKLGKMLIMGAVFRCIDPVLTVVAGLSVRDPFLLPQDKKDL
AGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFS
YILKDSGLIDTDANTNNSLSHNQSLVRGIICSGLFPGIASVVHRESSMSFKTMDDGQVLL
YANSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSVLILFGGAVTKGSMAGHLKML
DGYIDFFMDPSLSECYLQLKEELDKLIQQKLEDPNFDIHKEGKYILYAAQELAAGDLCEG
RFVFGRETSRARLRAPEEDGKSSLIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFR
GLVEFKGMQFVGKPKRNKQLAERDAAIEALGWLTQTSGVKPRDEGDDASPLDLTDSMLKL
LTRPRRHSKNSSRKR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcggcctgcgccgcgggctgggcatcctcctcgtcccacttcccaacgcaccc
agccgcccgccgccgacctctctcgcggctctcctcctccacccctaccgcctcaatggc
ttctcccgccgctccctctgcagcttccccagcgggggccgcgccgtcgagcagttctcc
gacgacgagtacgaccacgagtacgaggacctccggccgtcgtcgtcggtggcgaacatc
gatgagtggagatggaagctgagcatgctgcagcgcaacgccgaggagcaggagatcatc
tccagggaccggagggaccgccgggactatgaccagatcgccaatctcgccaagaggatg
gggctctacagtgaaatgtacgggagggtcatcgtcgcgagcaaggtcccactgcctaac
tacaggccggacctggatgacaaacgaccgcaaagagaggtggtgatcccgctgagcttg
cagaggagagttgaaggacttgttcaggagcatctagatcgttcactcttgtcactggat
aaaagtggtggcaacacgagaagtggctctgaggtagctgaaaaagctgataatgtgaac
ctggacgagcagcatgattctctgcttgataggtcagtcatggagaagatacttcagagg
aagagcattcggatgcgcaattttcagagaagttggcaggaatcaccagaaggatttaag
atgctagagcttcggaaatcacttccagcatacaaggaaaaagaaaggcttctagcagcc
attgcacgcaatcaggttatagtaatttctggggagacaggatgtggtaaaacaacacag
ctgcctcaatttgtattggagtcagaaatagagtctggccgaggggccttctgtaacata
atttgtacacaaccacgaagaatatctgcaatggcagttgcagaaagagtatccactgag
agaggagagggccttggtgaatcggttggctataaagttcgattggaaggaattaaggga
aaagacacacatttgcttttctgcaccagtggcattttactaagacgattgctgagtgac
cgaaacttgaatggtgtgactcatgtatttgttgatgaaatacatgaaaggggcatgaat
gaagatttcctgttgattgtactaaaagatctattatcacggcgccgtgatttgaggttg
atattgatgagtgctactctaaatgcggagctattctcaagttattttggaggagcccca
actatccacattcctggattcacacatccagtgagggcacattttctggaagatatattg
gagaggtcaggctacaggttgacctcaagcaatcagcttgatgattatggccaagataaa
gtctggaaaactcaaagacagctgctgcctagaaaaaggaaaaatcaaattactacactt
gttgaggatgcccttaaaaattcaagctttgaaacatatggttccagaacacgagattct
ctagcgaattggaatcctgattgcattgggttcaacctcatagaggctgttctgtgccac
atatgtcgcaaagaacgacctggtgctgttttagttttcatgactggatgggatgatatt
agttgcttgaaggatcaactgaaagcacatccattgctaggtgatccaaatagggttttg
ctgcttgcatgccatggttccatggctactgctgagcagaggctaatatttgagaagcca
cctcctaatgtccggaaggtagtcctagccacaaacatggcagaagcaagtattacaata
aatgatatcgtttttgttgtggattgtggcaaagcaaaggaaaccacatacgatgcgtta
aacaataccccctgcttactcccctcatggatttcaaaagcttctgcccgtcagaggagg
ggtagagctggccgtgtgcaacctggagaatgctatcatctctatcctagatgtgtgtat
gatgcatttgcagactatcagcttccggagcttcttagaactcctttgaattcattatgt
ttgcagataaaaagtttgcaagttgccagcattggggagttcctatcagctgctctacaa
cctcctgaaccactagctgttcaaaatgctgtggaattcctgaagatgattggtgcatta
gatggaaatgagaacctcactgatcttgggcgatacctttccattcttccagttgatcca
aaattgggaaagatgcttataatgggtgcagtttttcgctgcatagatcctgtacttact
gtagttgctggattgagtgttcgggaccctttcctgttgccacaggacaagaaggatttg
gcaggaactgcgaaatcaagattctcagcaaaggattatagtgatcatatggcccttgtt
cgggcttatgaaggatggaaagatgcagagagagaagggtctgcttatgaatactgttgg
agaaatttcctttctgctcaaacactacaagctattcactcacttcggaagcaattcagc
tatattttaaaggattctggtttgatagacactgatgcaaatacaaataacagtttgagc
cataatcaatcgttggtccgtggcatcatatgttctgggctttttcctgggatagcgtct
gttgtgcatcgagaaagctcaatgtcatttaagaccatggatgatggccaagttcttctt
tatgctaattcagtgaatgcaaagtaccagacaatcccatatccatggttggtttttggt
gagaaggtgaaggtgaatgctgtcttcatccgtgattcaactggagtatcagactccgta
ctgatcttatttggtggtgctgtcacaaaaggaagcatggctgggcacttgaagatgctc
gatggctacattgatttctttatggatcccagcctttctgaatgctacctacaacttaaa
gaagaacttgataaacttatacaacaaaagcttgaagacccgaactttgacatccacaag
gaaggcaagtacatcctgtacgcggcacaggagctcgccgccggcgacctatgcgagggt
cggttcgtgttcgggcgcgagacgagccgggcgaggctccgggcccccgaggaggacggc
aagagcagcctgatcaaggacgggatgaaccccaagagcttgctgcagacgctgctgatg
cgcgcgggtcacaccccgcccaagtacaagacgaagcacctcaagacgaacgagttccgg
ggcctggtggagttcaaggggatgcagttcgtggggaaaccgaagcggaataagcagctg
gcggagcgggacgccgccatcgaggcgctcgggtggctgacgcagacctccggcgtgaag
ccgcgggacgagggcgacgacgcctcgccgctggacctgaccgacagcatgctcaagctg
ctcacgaggccgaggcggcactcgaagaatagctctaggaaacggtga
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