Panicum hallii (Hall's panicgrass): 112875147
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Entry
112875147 CDS
T07366
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112875147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112875147
03009 Ribosome biogenesis [BR:
phai03009
]
112875147
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112875147
Spliceosome [BR:
phai03041
]
Complex A
U2 snRNP components
U2 related factors
112875147
Complex B
112875147
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
112875147
Ribosome biogenesis [BR:
phai03009
]
Eukaryotic type
90S particles
Helicases
112875147
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
ResIII
ABC_tran
SRP54
nSTAND3
T2SSE
AAA_30
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
112875147
NCBI-ProteinID:
XP_025794665
LinkDB
All DBs
Position
9:complement(63669864..63673783)
Genome browser
AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRGATNGAAAAAGGANPTVNRWNGRPYSARYFEILE
KRRTLPVWQQKDEFLRALRDNQTLILVGETGSGKTTQIPQFVLETEGLGNRSMVACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKY
KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSSAPLMKVPG
RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINN
MGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIV
YVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGN
LTQLGEMMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLSVPNCFLRPREAQKAADEAK
ARFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINARALKSADNVRQQLVRIMTRFNLK
MCSTDFNNREYYVNIRKALLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWV
IYNEYVLTTRNFIRTVTDIRGEWLIDIAPHYYDLSNFPSCEAKRVLERLYNKRERERTTN
RG
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcggaaggtgagcctcttcgacgtggtcgacgagacctccgtc
tccgccaagctcggccgcggcgccaccaacggcgccgccgccgccgcgggcggggccaac
cccaccgtcaaccggtggaacgggcggccatactcggcgcggtattttgagatcctcgag
aagcgccgcacgctccccgtgtggcagcagaaggacgagttcctccgcgccctccgcgac
aaccagaccctcatcctcgtcggcgaaacgggaagcggaaagaccacccagatcccccaa
ttcgtactcgagactgaaggcctgggtaaccgctcaatggttgcctgcactcagccgcgg
agggttgcagcaatgtcagtctccaggcgtgtggctgaggaaatggatgttactattggg
gaggaagtgggatacagcatccgttttgaggattgcagcagccacaaaactgttctcaaa
tatttgacagatggtatgcttctgagagaagcaatggcagacccacttttagagaagtac
aaggtgattgttcttgatgaggctcatgagagaacattggcaacagatgttctgtttggg
cttctgaaagaggttctaaaaaatagaccggatttgaagcttgtcgttatgagtgctacc
cttgaagcagagaaatttcagggttacttcagtagcgcaccattgatgaaggtaccaggg
agacttcacccggttgaaatcttctatactcaagaaccagaaagggactacctagaggct
gctatcaggacagttgtgcaaatacacatgtgtgaacctgctggtgatatccttgtattc
cttacgggagaagaggagattgaggatgcctgtcgtaaaattaataaggaaattaataac
atgggagatcaggttggcccagttaaagttgtgcctttgtattctacgctgcctccagcc
atgcagcagaagatttttgagcctgctcctgccccgttgaaggaaggaggccctcctggg
agaaaaattgttgtgtctacaaacattgctgagacatccttaactatagatggtatagtt
tatgtgatagacccaggattttccaaacagaaagtttacaacccaaggataagggtggaa
tccctcctggtgtcgccaatttccaaggcaagtgctcatcagagagctggtcgtgctgga
agaacgcagcctggaaagtgcttcaggctatacacagagaagagttttaatgaggatttg
caaccacaaacctacccagaaattcttaggtcgaacctggcaaatacagttcttaccttg
aagaaacttggaattgatgatttagtacattttgactttatggatcctccagcaccggaa
actcttatgagggctttagaggttttgaactacttgggggcacttgatgatgacggtaat
ttaacacagttaggtgaaatgatgagtgagtttcccctggatccacaaatgtcgaagatg
cttgtcatcagtccaaagtacaactgttcgaatgagatcctatcaatatctgccatgctg
tcagtacccaattgcttcctccggcctagggaggctcaaaaggctgctgatgaggcgaag
gctcgatttggccatattgatggggaccatctcacacttctgaatgtataccatgcgtac
aagcaaaacaatgaagatccccagtggtgttatgagaactttatcaatgccagagcacta
aagtctgcggacaatgtcagacaacagcttgttcgcatcatgactagattcaatctcaag
atgtgcagcacagacttcaataaccgtgagtactatgtcaatatcaggaaagcactgctc
gcagggtatttcatgcaggttgctcacctggagcgcactggacattacttgactgtaaaa
gataaccaggttgtccatcttcatccctcgaactgcatggaccataagccagagtgggtc
atctacaacgaatacgtcctgacaactaggaatttcatccgcactgtcactgatatccgt
ggggaatggctgattgatatcgctccacactactatgatctgagcaacttcccgtcatgc
gaggcaaagcgtgttctcgagaggctgtataacaagcgggagagggaaaggaccacgaac
agaggttga
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