KEGG   Panicum hallii (Hall's panicgrass): 112876219
Entry
112876219         CDS       T07366                                 
Name
(RefSeq) cleavage stimulation factor subunit 50
  KO
K14406  cleavage stimulation factor subunit 1
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    112876219
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phai03019]
    112876219
Messenger RNA biogenesis [BR:phai03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     112876219
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WDR55 EIF3I WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EML NBCH_WD40 Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_Aladin WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_DCAF4 Cytochrom_D1 Beta-prop_WDR75_1st Beta-prop_NOL10_N Beta-prop_NWD2_C Ge1_WD40 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_Nup120_160 RMC1_N Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 112876219
NCBI-ProteinID: XP_025796060
LinkDB
Position
9:complement(4819782..4823732)
AA seq 422 aa
MDEAVQEAKLLRQVNALIVAHLRGQSLGQAAAAVAAATMIPLSAADSVPANHLLRLVAKG
LAAERGGAASAFDSAGFGGVVPPLGSGAVDFSVQDVRGSSKSFPKHEAKHVSDHKNIARC
AKFSPDGKYFATGSADTSIKFFEVAKVKQTMAGDSKDGNARPVIRTFYDHMQPINDLDFH
PESPILISASKDNTIKFFDFSKTNARKAFRVIQDTHNVRSVCFHPCGDYLLAGTDHPVAH
LYDVNTFTCFLSANPQDSSSAINQVRYSCTGSLYVTASKDGSLRIWDGVSAECVRPIIGA
HGSAEATSAVFTKDERYLLSCGKDSSVKLWEVGTGRLVKQYAGAVHRQFCCQAVFNETEE
FVLSVDEQNSEVVVWDALTAEKVARLPSGSTVAPRWLDHSPVEPVFVTCGNDRSIRFWKQ
TV
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggacgaggcggtgcaggaggcgaagctgctgcggcaggtgaacgccctcatcgtggcc
cacctccgcggccagagcctcgggcaggccgccgcagccgtcgccgccgccaccatgatc
cccctctccgccgccgactccgtccccgccaaccacctcctccgcctcgtcgccaagggc
ctcgcggcggagcgaggaggagcggcttccgcgttcgactccgccgggttcggtggggtg
gtgccgccgctcggctccggtgccgtggatttcagtgtgcaggatgtcagaggctcgtcc
aagagcttccccaagcacgaggcgaagcacgtctctgatcataagaacattgcccggtgt
gcgaaatttagtcctgatggcaagtattttgcaactgggagtgctgacacatccattaag
ttcttcgaggttgctaaagttaagcagacgatggcaggagactccaaagatggcaatgcc
cggcctgtgatacgtacattttatgatcacatgcagcccatcaacgatctcgattttcat
cctgagagtccaatactgatatcagcttcaaaagacaatacaataaaattctttgacttc
tcaaaaaccaatgcaaggaaagcattcagagttattcaggatactcataatgttagatct
gtatgttttcatccatgtggggattaccttttagcaggaactgatcacccagttgctcat
ctgtatgatgtaaacactttcacatgctttttatcagcaaatccacaggattctagttct
gccattaaccaggtgcgttactcgtgtactgggagcttgtatgtgactgcttctaaagat
ggttctctgcgcatctgggatggagtatctgctgaatgtgttcgtcctattattggagca
catggatctgcagaagctactagtgcagttttcaccaaagatgagaggtacctcctgtct
tgtggaaaggattcttctgtaaagttgtgggaagttggcactggacgacttgtgaagcaa
tatgcaggagctgttcacagacaattctgttgtcaggctgtcttcaatgaaactgaggag
ttcgtgctatcagttgacgaacaaaacagtgaggttgttgtctgggatgcacttactgct
gaaaaggttgcaagattgccctctggcagcaccgttgctcctagatggctcgaccactcc
ccagtagaaccagtgtttgttacttgcggaaacgatagatccatcagattctggaaacaa
actgtgtag

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