Panicum hallii (Hall's panicgrass): 112876312
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Entry
112876312 CDS
T07366
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112876312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112876312
03041 Spliceosome [BR:
phai03041
]
112876312
03036 Chromosome and associated proteins [BR:
phai03036
]
112876312
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112876312
Spliceosome [BR:
phai03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112876312
Complex B
112876312
Complex C
U2 SnRNP specific factors
112876312
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112876312
TFTC complex
112876312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
112876312
NCBI-ProteinID:
XP_025796182
LinkDB
All DBs
Position
1:2048689..2053680
Genome browser
AA seq
1230 aa
AA seq
DB search
MYLYCLTLQRATGAVCPVIGSFSGRDTKKSAASGSGSTQEIAVVRGGTLDLLRPDPETGR
LRTLISVDVFGAIRSLAQFRLTGASKDYLVVGSDSGRLVILEYCPDRNRFDKVHQETFGK
SGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNTLTFS
LTALDCGFDNPIFAAIELEYAESDRDPTGQAANQAQKILTFYELDLGLNHVSRKASEPID
NGANLLVTVPGGSDGPSGVLVCCDNFVLYRNQGHPEVRAVIPRRADLPAERGVLIVAAAT
HRQKTMFFFLLQTEYGDIFKVDLEHSGDTVTELRIKYFDTIPVTSAICVLRSGFLFAASE
FGNHALYQFRDIGRDADVESSSATLMETEEGFQPVFFQPRALKNLMRIDDIESLMPVMDM
RVANLFDEETPQLFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNINDMF
DAYIVVSFANVTLVLSIGETIEEVSDSQFLDTTHSLAVTLLGEDSLMQVHPNGIRHIRED
GRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLA
IAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLLFLEVQASVGG
EDGADYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAML
CLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIERLGET
FNETAIPLRYTPRKFVILPKKKYIAVIESDTGAFSAEEREAAKKECLEASGAAENGNANN
GDPMENGDAQEDGAEEGNTFPDEQYGYPKAESERWVSCIRILDPRSRDTTCLLELQDNEA
AVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRTLAAGFIHIYKFVDEGRSLELLHKTQVE
EVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIVSIHTYRDRIYIGDMQ
ESFHYCKYRRDENQLYIFADDSIPRWLTAAQHIDFDTMAGADKFGNIYFARLPQDISDEI
EEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSV
GALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPSLP
ADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctactgcctgacgctgcagcgggcgacgggcgcggtgtgccccgtcatcggc
agctttagcgggcgcgacacgaagaagtcggcggcgtccgggtccggctccacgcaggag
atcgccgtggttcggggcggaacgctcgacctcctccgcccggacccggagacgggccgc
ctccgcacgctcatctcggtcgacgtcttcggcgccatccgctcgctcgcgcagttccgc
ctcaccggcgccagcaaggactacctcgtcgtcggctccgactccggccgcctcgtcatc
ctcgagtactgcccggaccgcaaccgcttcgacaaggtccaccaggagaccttcggcaag
tccggctgccgccgcatcgtccccggccagctgctcgccgtcgaccccaagggacgcgcg
ctctgcattgccgcgctcgagaagcagaagctcgtctacgtcctcaaccgcgacgccgcc
gcgcgcctcaccatctcgtccccgctcgaggcgcacaagtccaacaccctcaccttctcc
ctcaccgcgctcgactgtggattcgacaaccccatcttcgcggccatcgagctcgagtat
gccgagtctgaccgcgaccccacggggcaggctgcgaaccaggcgcagaagatcctcacc
ttctacgagcttgacctggggctcaaccatgtctcccgcaaggcctctgagccgattgat
aatggtgccaatcttcttgtgactgtccctggtggaagcgatggtcccagcggggttctt
gtgtgctgtgacaatttcgtgctttaccggaaccaggggcacccagaggttcgtgctgtc
attccgcgccgtgctgacctcccagctgagcgtggtgtcctcattgttgctgctgctaca
cacaggcaaaagactatgttcttcttcttactacagaccgagtatggtgacatcttcaag
gtcgaccttgaacatagcggagataccgttactgagctcaggatcaagtactttgacacc
atacctgtgacatcagctatctgtgtgctgcgatccggtttcctctttgctgcttctgag
tttggcaaccatgcactttaccagttccgtgatattggcagggatgcagatgtcgagtcc
tcttcagcaacactgatggagacggaggaggggttccagccggtattctttcagcccagg
gcactaaagaacctcatgcgcatagacgacatcgagagcctcatgccagtcatggatatg
cgtgtcgcgaatttgtttgatgaggaaacaccccagttgttcacagcctgtggccgtggt
ccgcgctccacactgcgcatcctgaggcctggccttgccatcagcgagatggcacgatca
atgctgcctgcagagcctattgctgtgtggactgtcaagaagaatatcaatgacatgttt
gatgcctacattgttgtgtcctttgctaatgttacgcttgtgctctctattggtgagacc
attgaagaagtcagtgacagccagttcctggatacaactcactccttagcagtcactctc
cttggtgaggactctctcatgcaggtccatccaaatggtatcaggcacatcagggaggat
ggccgtgtcaatgagtggaggacgcctggaaagaaaactattacaaaggttggatcaaac
cggctccaggtggtaatcgctctcagtggtggagagctcatctattttgagatggacatg
actggtcagctcatggaggtggagaagcaggacatgtctggcgatgttgcatgcctggcc
attgcgccggtccctgagggaaggcaaaggtccagatttctcgctgtaggatcctatgat
aacaccatccgtatcctctccctggaccctgatgactgcctgcagcctctaagtgtccag
agtgtatcatctgcaccagagtcactcctattcctagaggtacaggcatcagttggtggt
gaggatggtgcagactatcctgccaaccttttcctcaatgctggcttgcagaatggtgtt
cttttccggaccaatgttgacatggttacgggtcagctatcggacacaaggtctcgattc
cttggcctgagacctccaaagctatttccttgtatagttagccacaggcaagcaatgctc
tgcctgtccagccgtccctggctgggctatatacatcaaggtcacttcctcttgacacca
ttgtcctgtgatacactcgaatctgccgcatccttttcttctgatcagtgctcagaaggt
gttgttgctgttgcgggagatgccctgcgtattttcaccattgaacgcctgggagagact
ttcaatgagacggccatccctctgcgctacaccccaaggaagtttgtgattctaccaaag
aaaaaatatattgctgtcattgagagtgatacgggtgcattcagtgcagaagagcgagaa
gctgctaagaaagagtgcctcgaggcttctggtgcagcggagaatggaaatgcgaataat
ggggatccaatggagaatggtgatgcacaagaagatggtgctgaggagggcaacacattt
cctgatgaacagtatggttatccaaaggcagaatcggagcggtgggtttcctgcattagg
atccttgatccaaggagtagggacacgacctgtctgctggaattgcaggacaacgaggct
gctgtcagtatttgcactgtgaatttccatgataaggaacatggcactcttcttgctgtt
ggcactgccaagggattgcagttctggccaaagaggacccttgctgctgggttcatccac
atatataagtttgtggatgaagggaggtcacttgaacttctgcacaagacacaagtggag
gaagtacctcttgcattgtgccaattccagggacggttacttgcaggtgttggttcagtg
ctcagactatatgatctggggaagagaaaactgcttagaaaatgtgagaacaagcttttt
ccaaggacgatagtgtctattcatacctaccgtgataggatctatattggtgatatgcaa
gagtcatttcactactgcaagtacagacgggatgaaaaccagctctatatctttgctgat
gacagcatccccagatggcttacagcagctcaacacatagattttgacactatggctgga
gcagataaatttgggaatatatattttgctcgtcttccgcaggatatctcagatgagatt
gaagaagacccaactggaggcaagattaaatgggagcaaggaaagttaaacggtgcccct
aacaaagttgaggaaattgtgcagtttcatgtcggtgatgttgtcacatgtttgcagaag
gcctctttaattcctggcggaggtgaatgtcttatttatggaactgtgatgggcagtgtg
ggagcactgcttgcattcacctccagggaagatgttgacttcttctctcacttggagatg
catctccgtcaggagcatccaccattatgtggaagagatcacatggcatacagatctgct
tattttccagtgaaggatgtgatagatggtgatctctgcgagcagtatccatccctacca
gctgatatgcagaggaagattgctgatgagctcgacagaacacctggtgaaatactgaag
aagctagaagacatcaggaacaaaatcatctaa
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