Panicum hallii (Hall's panicgrass): 112876572
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Entry
112876572 CDS
T07366
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112876572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112876572
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
112876572
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
112876572
NCBI-ProteinID:
XP_025796496
LinkDB
All DBs
Position
9:66580134..66583377
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AA seq
536 aa
AA seq
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MGTGTGVGAPADLVLKAACERCGAASDLYGTSCRHTTLCTGCGRAVARARGRCAVCAAPV
TRLIREYDVRVDTSAEKAHFIGRFTTGLPPLSKKRSAGNRWSLRKDVPQGRQLTGNMREK
YYSRRPWFLEDEICEHQYQGQIEDSPATYYSLTLKGKEITAVPVGSWYNFSKVAQYKQLT
LEEAEEKMNRRRNSAFGYERWLMKAATNGAAAFSSDVKRLDDVNGGVTNGVHPKKEDMNG
NGNQSVKVEEDEEGEAERRNRVGLTTKGIDEDGEESGKDRDFDLDDEIEKGDDWEHEETF
TDDDETLDIDIEERPDLADPEAAPPEIKQDDNENELGSSDNLSKSGQELKKLLRRAAGEN
ESDTDDKNTDEDEPSSPECAPKQLVVPKNEQVDSNLAKPTPSAHAQDPTPPSKATQKRRS
GGGGANTSNAAASKKIKTEPVTRMLSVKDEIPSSLEPTSEASLPASTAELSPITEEEVRT
VLRALAPVTSQDLVLRFRPRLVTQEDKRAFLNIVKKISHMFKNNGRNYLVLRQEHK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgggcacggggacgggggtcggcgcgcccgccgacctggtcctgaaggcggcgtgcgag
cgctgcggcgccgcgtcggacctctacggcacgtcgtgccggcacaccaccctctgcacc
ggctgcggcagggccgtggcgcgcgcccgcgggcgctgcgccgtctgtgccgcccccgtc
accaggctcatccgggagtacgatgtccgggtggatacctccgcggagaaggcccacttc
atcggcaggttcaccaccggcttgccgcccttgtcgaagaagaggagcgcggggaacagg
tggtctctccgcaaggatgtcccgcaaggacggcagcttaccgggaacatgcgggagaag
tactacagcaggcggccttggtttttggaggatgagatatgtgaacatcagtatcaaggc
caaattgaagactcaccggctacatactattcactaacgttgaaaggcaaggagatcact
gctgttccagttggttcctggtacaacttcagtaaagttgcacagtataaacagctgacc
ttggaagaagctgaagagaagatgaatagaaggagaaatagtgcatttggatatgaacgg
tggctgatgaaggcagctacaaatggagctgctgcctttagttcggatgtgaagaggctt
gacgatgtaaatggaggggtaacaaatggggttcaccccaagaaagaagatatgaatggg
aatggaaatcaatctgtcaaagttgaggaggacgaagaaggggaagctgaaaggagaaac
agggttgggcttactactaaaggcatcgatgaggacggcgaggaaagcgggaaggacaga
gacttcgatttggatgatgaaattgagaaaggtgatgattgggagcacgaagaaaccttc
actgatgatgatgagactctggacattgatatagaggaaagacctgatttagcagatcct
gaggctgctcctcctgaaattaagcaggatgacaacgagaatgaattaggcagcagcgac
aacttgagcaagtccggtcaggagctaaaaaagctactccgccgagctgctggggaaaat
gagtctgacaccgacgacaaaaacacagatgaagatgaaccatcatcgccagaatgtgct
ccaaaacaactggttgtacccaaaaatgaacaagtggatagcaaccttgctaaaccaaca
ccatcagcgcacgctcaggaccctacacctccatccaaagccactcaaaagaggagatca
gggggtggtggtgcaaatacttctaatgctgcagcctccaaaaagataaagacagaacct
gtaaccagaatgttgtctgtcaaggatgaaattccgtcttctttggaaccaacttcagaa
gcatctcttccagcaagtacggcagaattatcacccatcacagaggaggaagtcaggaca
gtacttcgtgcacttgcaccagtcacatctcaagatctggtgttgaggttcaggcctcgt
ttagtaactcaagaggacaaaagagcatttcttaacattgtgaagaaaatctctcacatg
tttaagaacaacggccgtaactacctcgtccttcggcaggaacacaagtga
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