Panicum hallii (Hall's panicgrass): 112876810
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Entry
112876810 CDS
T07366
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03030
DNA replication
phai03420
Nucleotide excision repair
phai03430
Mismatch repair
phai03440
Homologous recombination
phai03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112876810
03420 Nucleotide excision repair
112876810
03430 Mismatch repair
112876810
03440 Homologous recombination
112876810
03460 Fanconi anemia pathway
112876810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phai03000
]
112876810
03032 DNA replication proteins [BR:
phai03032
]
112876810
03400 DNA repair and recombination proteins [BR:
phai03400
]
112876810
Transcription factors [BR:
phai03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112876810
DNA replication proteins [BR:
phai03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112876810
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112876810
MMR (mismatch excision repair)
112876810
DSBR (double strand breaks repair)
HR (homologous recombination)
112876810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
112876810
NCBI-ProteinID:
XP_025796774
LinkDB
All DBs
Position
9:complement(68218970..68222434)
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AA seq
622 aa
AA seq
DB search
MDAAKSVTPGAVSHILANPSPSDAAGAPELVVQVVDLKPLGGTSRFSFIASDGKGKIKAM
LPAKFAAEVRSGNLQNLGLIRILDYTCNSVPNNEKALIITKCEVASQALDAEIKSEAKKE
EEPTIVLKPKDEGVESKPPNAPPVVLKPKQEVKSASQIVNEQRGNAAPAARLAMTRRVHP
LISLNPYQGNWVIKVRVTNKGNLRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAKKF
YSMFELGKVYYVSKGSLRIANKQFKTVQNDYEMTLNENAVVEEAEGETFIPQVQFNFVKI
DQLGSYVNGRELIDVVGVVQSVSPTLSVRRKFDNETIPKRDIVVADDSGKTVSVSLWNDL
ATTTGQELLDMVDSSPIIAIKSLRVSDFQGVSLSTVGKSTLLVNPDLPEAQNLKLWYDSE
GKGTSMAPIGADMGAARAGGLRSMYSDRVFLSHITSDPNMGQEKPVFFSLNAIISHIKPD
QNMWYRACKTCNKKVTEAVEGGYWCEGCNKNDAQCSLRYIMVIKVSDPTGEAWVSVFNEH
AEKIIGCSADELDRIRREEGEDSYILKLKEATWVPHLFRVSVAQHEYMNERRQRITVRTE
APVDYAAESKYLLEEIAKLTAC
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgccaagtccgtcacgccgggcgccgtgtcccacatcctggcgaacccgtcg
ccgagcgacgccgccggggccccggagctcgtcgtccaggtcgtcgacctcaagcctctc
ggcgggaccagccggttcagtttcattgcgagcgacgggaagggcaagatcaaggcgatg
ctccccgccaaattcgcggcagaggttcggtccggcaacctccagaacctcggcctaatc
cgcatcctcgactacacctgcaattccgtccccaacaacgagaaggccttgattatcacc
aaatgcgaggttgcgtcccaagcgctcgacgccgagatcaagagcgaggccaagaaagaa
gaggagcctacgattgtcctcaagcccaaggacgaaggcgtggagtccaagcccccaaat
gctcccccggttgtgttgaagccgaagcaggaggtgaaatccgcgtcccagatcgtgaac
gagcagcgtggcaatgctgctccagcagcgcgcctggccatgacgaggagggtccatcct
ttgatctccctgaacccttaccagggtaactgggtcatcaaggtgcgagttacgaacaag
ggcaacctcagaacttacaagaatgcccgtggagaaggctgtgtcttcaatgtagagctc
actgatgaggatggcacccagatccaggccaccatgttcaatgaggctgcaaagaagttc
tattcaatgtttgagctggggaaggtctactacgtctccaagggatcacttaggattgcc
aacaagcagttcaagacggtccagaatgactatgagatgacactgaatgagaatgctgtt
gttgaggaagcagagggggaaactttcattccacaggtgcaattcaattttgtcaagatt
gatcagctaggatcatatgtcaatggcagggaacttatagatgttgttggtgttgttcag
agcgtatcacccacactgagtgttaggagaaagtttgacaatgagacaataccaaagcgt
gacattgttgttgcagatgactcgggcaaaactgtgagtgtttcactctggaacgatctt
gctactaccactggccaagagctcttggacatggttgacagttcgcccatcattgcgata
aagagcctaagagtatctgacttccaaggtgtgtctctttcaactgtaggcaaaagtact
cttctggttaatccagaccttccagaggcacagaaccttaaattatggtatgactctgaa
ggcaagggtacttcaatggcaccgattggtgcagacatgggtgcagcacgggctggtggc
ttgagatccatgtattccgatagagtttttctgtctcacatcaccagtgatcctaatatg
ggccaggaaaagcctgttttcttcagtttgaatgccatcataagccacattaagcctgat
cagaacatgtggtaccgtgcttgcaagacctgcaacaagaaggtgactgaagctgttgaa
ggtggatactggtgtgaaggatgcaataagaatgatgctcagtgctcattgagatatatc
atggtcatcaaggtctctgatcccactggtgaggcatgggtttctgtcttcaacgagcat
gcagagaagatcattggctgcagcgccgatgagcttgatcggatcagaagagaggagggc
gaggacagctacattctcaaactcaaggaagccacctgggttccccatctgttccgtgtc
agcgtcgcgcagcacgagtacatgaacgagaggaggcagaggataaccgtgaggactgag
gcgccggtcgactacgcagctgaatccaagtacctgcttgaggagatcgcgaagcttact
gcttgctag
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