KEGG   Panicum hallii (Hall's panicgrass): 112877285
Entry
112877285         CDS       T07366                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03030  DNA replication
phai03410  Base excision repair
phai03420  Nucleotide excision repair
phai03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112877285
   03410 Base excision repair
    112877285
   03420 Nucleotide excision repair
    112877285
   03430 Mismatch repair
    112877285
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:phai03032]
    112877285
   03036 Chromosome and associated proteins [BR:phai03036]
    112877285
   03400 DNA repair and recombination proteins [BR:phai03400]
    112877285
DNA replication proteins [BR:phai03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    112877285
  DNA Replication Termination Factors
   ELG1-RFC complex
    112877285
Chromosome and associated proteins [BR:phai03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    112877285
DNA repair and recombination proteins [BR:phai03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     112877285
  Check point factors
   HRAD17(Rad24)-RFC complex
    112877285
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 AAA_lid_RFC1 Sigma54_activ_2 AAA_22 DUF815 RuvB_N nSTAND6 AAA_16 Mg_chelatase ABC_tran RsgA_GTPase AAA_2 AAA_5 AAA_29 AAA_24 nSTAND3 AAA_11 ATPase_2 nSTAND1 MobB
Other DBs
NCBI-GeneID: 112877285
NCBI-ProteinID: XP_025797316
LinkDB
Position
9:complement(3242918..3247095)
AA seq 354 aa
MLWVDKYRPKTLDKVTVHDQVAQNLRKLVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG
AGAEKVKMENKTWKIDTGTRTLEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN
RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRVNAPSEDQIVQVLEFIGKKENLQLPAGFAARIAAQSNRNLRRAILFFETCKVQQY
PFTSNQAAPPLDWEQYVSEISTDILTEQSPKRLYAVRQKFYELLVNCIPPESILKKLLAE
LLKKLDSDLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVASFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtggacaagtaccggcccaagaccctagacaaggtcaccgtccacgaccag
gtcgcgcagaacctccggaagctcgtgtcggagcaggattgcccgcacctgctgttctat
gggccgtcggggtccgggaagaaaaccctaatcctagcgctcatcaagcagatgttcggc
gccggcgcggagaaggttaagatggagaacaagacatggaagattgataccggaacaaga
acacttgagatagagttggcgatgttgtcgagtgctcatcatgtggagatgaaccccagt
gatgcaggctttcaggacaggtatgttgtccaggaggtcatcaaagagatggcaaagaat
aggccaatcgatgccaaaggcaagagagcatttaaagtccttgtgttaaatgaagttgac
aaactctcacgagaagcccagcattccctccgaaggactatggagaagtatagtgcatca
tgcagactgatcctatgctgtaacagctcatcaaaagtcacagaggctgtaagatcccgt
tgcttaaatgtgcgagtgaatgctcctagcgaagatcagattgtccaagttctagagttc
attgggaagaaagaaaacctgcagcttccagctggatttgctgctcgtattgcagcacaa
tcaaaccgtaatctgagacgggcaatactgttttttgagacttgcaaagtgcaacaatac
ccatttacatcaaatcaagccgcacctcctcttgactgggagcaatatgtctctgaaata
tcaactgatatcctgacagaacaaagccctaaaaggctatatgctgtacgccagaaattc
tatgaattacttgtcaattgtatcccacctgaaagtattttgaagaagttgttggcggaa
ttactgaagaagttagactctgatctgaagcacgaaatctgtcactgggctgcacactat
gagcacaagatgcgccttggatcaaaagccatttttcacctagaagctttcgtggcaaag
ttcatgagcatttacaaggaattcctggtggcttcatttggttga

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