KEGG   Panicum hallii (Hall's panicgrass): 112877744
Entry
112877744         CDS       T07366                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    112877744
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:phai04121]
    112877744
   03036 Chromosome and associated proteins [BR:phai03036]
    112877744
Enzymes [BR:phai01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     112877744
Ubiquitin system [BR:phai04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    112877744
Chromosome and associated proteins [BR:phai03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     112877744
    Noncanonical PRC1 (PRC1.1)
     112877744
    Noncanonical PRC1 (PRC1.3/1.5)
     112877744
    Noncanonical PRC1 (PRC1.6)
     112877744
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-UDP zf-RING_6 zf-rbx1 zf-Nse zf-C3HC4_5 ZNF512_C2HC zf-RING_11
Other DBs
NCBI-GeneID: 112877744
NCBI-ProteinID: XP_025797886
LinkDB
Position
9:complement(11729707..11735575)
AA seq 463 aa
MPAQKRPPAPSLSAAPGAGSPPPVPSPPPPAAEPAEKKPKLEENGAEANGNVNDSGAKAA
AAAAASESESESEDADAVNQEFIPVKLADIRKEVQCPICLGIIRKTRTVMECLHRFCREC
IDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFNEEENDRN
KQIQASIAEAFRKQSEVIGRKSTAKATAAAFVRRSRRNIRANGHSTYFRGRGRASSDDVA
LACSDDEEDGNGQNLGKEESSAEESSPEKKQKRPPKWPTPRSSPARAACSEEAASDDKDD
VGISRENFSTSPLRAWGKNGTRSQTRYSSFSGSNGRVVKGGRMIKLVECLRNSDDNDSER
DIHLCLLPLDGQTTPNLEKPYLCCGPTLSIKQLCQFVASQTSHKDEEVEIYARKPSYNDL
VSTNTSGFDKARLVGEERLSDLRSSFTFPNGVLELVYAIKVAN
NT seq 1392 nt   +upstreamnt  +downstreamnt
atgcccgcccagaagcgcccgcccgcaccctccctctccgcggcccctggcgccggctcg
ccccctcccgtgccctctccgccgccgcctgcggccgagcccgcggagaagaagcccaag
ctggaggagaacggcgccgaggccaacggaaacgtcaacgattccggcgcgaaggcggcg
gcggcggcggcagcgtcggagtcggagtcagagtcggaggacgcggacgccgtgaaccag
gagtttattccagtgaaattggcggacatacgcaaagaagtgcagtgtcccatatgctta
ggcattatccggaagactagaacagttatggagtgtctgcaccggttctgcagggaatgc
attgacaaatccatgcgacttgggaataacgagtgcccagcatgccgcacacattgtgca
agtcggcgttctttgagagatgatcccaactatgatgccctgattgcagctctgtaccca
gatattgacaaatatgaagaagaggaactagccttcaacgaagaggagaatgatcgcaat
aaacagattcaagcatccattgccgaggcttttcggaaacaatcagaagttattgggcgg
aagtctactgccaaagctactgctgccgcatttgtaagaagatcacgccgcaacattcgg
gccaatgggcatagtacctattttcgtggtagaggaagagccagttccgatgatgttgca
ctggcctgttctgatgatgaagaggatggaaacggtcaaaacttgggtaaagaggagtcc
tctgctgaggagagttccccagagaaaaagcagaaacgaccgccgaaatggccaacacca
cgttcttcacctgcccgagcagcatgcagtgaagaggctgcttctgatgataaggacgat
gtaggaatctctagagaaaattttagcacatctccgctgcgagcatggggaaagaatggt
actcgcagtcagactcgatacagtagctttagtggttcaaatggcagggtggtcaagggt
gggcgcatgatcaagttggttgagtgtctgcgaaattctgatgacaatgatagcgagcgt
gacatacatctttgtttgcttccactggatggacaaactacaccaaatctagagaagcca
tatctgtgttgtggcccaactctctccatcaaacagctttgtcagtttgtcgccagtcag
acatctcacaaggatgaagaagttgagatctacgcacggaagccttcctacaacgacctt
gtcagcactaacacatccggttttgataaggcaaggcttgtaggggaggagcgcctttca
gacttgcgatcctcattcacatttcccaatggggttctggagctggtctatgccatcaaa
gtcgcaaactag

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