Panicum hallii (Hall's panicgrass): 112877871
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Entry
112877871 CDS
T07366
Name
(RefSeq) endoribonuclease Dicer homolog 1 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
phai
Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phai03036
]
112877871
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112877871
microRNA pathway
RISC loading complex
112877871
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
PAZ
DND1_DSRM
DEAD
Helicase_C
ResIII
Dicer_PBD
SNF2-rel_dom
SLFN-g3_helicase
Kinesin
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112877871
NCBI-ProteinID:
XP_025798030
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All DBs
Position
9:72723439..72734953
Genome browser
AA seq
1928 aa
AA seq
DB search
MAGGGAGDAGGGEHASAAYWYDACEDGASLLCGIDFAASADFDPGLIPAMDCGADDGFVA
EIDRILESINAETTPAPPPPPPPAHALAPAPAPVAPPQPQPQLQEAFAAVAHNAVAVVDA
AQRTHGVEARKEPRRESPVAAANGGGECRDGKRQRLTAAGTGGPRQDWRRRPPPPPPSRG
WEDRRGRREHERPRKRDRDGHHTHDHHRREARGFWERDRGGKMVFRHGMWEAEVDRQGKR
ARTQDGSPAESKVEVDQTVASQKEKPVTEEQARQYQLEVLEQAKSRNTIAFLETGAGKTL
IAVLLIKSICDKMRKENKKMLAVFLVPKVPLVYQQAEVIRERTGYCVGHYCGEMGQDFWD
SRKWQREFESKQVLVMTAQILLNILRHSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFY
HTTPKDKRPVVFGMTASPVNLKGVTSQEDCAIKIRNLESKLDCIVSTIKDRKELEKHVPM
PSEVIVHYDKAATLLSFHEQIKQMEATVEEAALSSAKRTKWQFMGARDAGSRDELRLVYG
VSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQVDVKFQES
YLKKVVDLLHCQLTEGAAMKSDNNDVEMPNAENHKPNELEEGELPDSHAVSVGEHVDEVI
GAAVADGKVTPRVQALIKILLKYQHTEDFRAIIFVERVVTALVLPKVFAELPSLGFIRCA
SLIGHNNNQEMRSCQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLA
YIQSRGRARKPGSDYILMLERGNLSHEAFLKHARSSEETLRKEAIERTDLSHLDGTSMIS
PVDTSPDSMYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPEGSTE
YSCKLQLPCNAPFEKLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDMLLPDRGSGEREK
TEQNDEGDPLPGTARHREFYPEGVAEILRGEWILSGRDGCQSSQFIKLYMYSVNCVNIGT
SKDPFVTQLSNFALIFGNELDAEVLSTTMDLFVARTMITKASLVFRGPIEITESQLVLLK
SFHVRLMSIVLDVGVDPLTTPWDPAKAYLFVPVGAEKCMDALREIDWTLVNSIVNSDAWN
NPLQRARPDVYLGTNERTLGGDRREYGFGKLRNGSAFGQKAHPTYGIRGAIADFDVVKAS
GLVPARDRGHFNDYQNQGKLFMADSLWDAKDLAGMVVTAAHSGKRFYVDSICYNMNAENS
FPRKEGYLGPLEYSSYADYYKQKYGVELIYKKQPLIRARGVSYCKNLLSPRFEHSEANNG
EFSENLDKTYYVYLPPELCLVHPLPGSLIRGAQRLPSIMRRVESMLLAIQLKDIIGYPVP
ANKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN
MILYQYALNKSLQTYIQADRFAPSRWAAPGVLPVFDEETRDSEPSIFEESSPRCELHKDS
YEDYADSMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMRWIGIHA
ELDPQEIPTSKPYIIPESIMKSIDFDTLEGALGIKFQTKGLLVEAITHASRPSSGVSCYQ
RLEFVGDAVLDHLITKHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGS
SALETQIREFVKDVQEELSKPGFNSFGLGDCKAPKVLGDIFESIAGAIFLDSGYDTSIVW
KVFQPLLDPMVTPDTLPMHPVRELQERCQQQAEGLEYKASRTGNVATVEVFVDGIQIGVA
QNPQKKMAQKLAARNALVVLKEKETAAKKDTEKDGEKKNGSQMFTRQTLNDICLRKQWPM
PQYRCVNEGGPAHAKRFVYAVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNRN
YQHKPDGK
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggaggcgccggtgacgccggcggcggcgagcacgcgtcggcggcgtactgg
tacgacgcctgcgaggacggcgcctcgctgctgtgcggcatcgacttcgccgcgtccgcc
gacttcgacccgggcctcatacccgcgatggactgcggcgccgatgatggcttcgtcgcc
gagatcgatcggatactcgagagcatcaacgccgagaccacccccgcgccgccgccgccg
ccacctcctgcgcatgcgcttgcgcctgcgcccgcgcccgtggctccgccgcagccgcag
ccgcagttgcaggaggcgttcgcggccgtggcccacaatgcagtggcggtggtggacgcg
gcgcagaggacccacggcgtcgaggcgaggaaggagcccaggagggagtccccggtcgcc
gcggccaatggcggcggggagtgcagggacgggaagcgccagcgtctcactgcagctggt
actggaggaccccgccaagactggcggcggcgtccgccgccgccacctccctctcgtggt
tgggaggaccggcgtggaaggcgggagcacgagaggcctcgtaaacgcgaccgcgacggt
catcacacccatgatcaccaccgacgcgaggctcgaggtttctgggagcgtgaccgcggc
ggcaagatggtgttccgccatggcatgtgggaggctgaggtggaccgccaaggaaagcgc
gccaggacgcaggatggaagccctgccgagagtaaggtggaggtggatcagacggtagcc
tcgcagaaggagaagcctgtcactgaggagcaggcgaggcagtaccagctcgaggtgctt
gagcaagcaaagagcaggaacacaattgccttccttgagactggtgccgggaagactctc
atagctgttctgctcatcaaaagtatttgtgacaaaatgcgcaaggagaacaaaaagatg
cttgctgtcttcttggtgcctaaggtgcctcttgtgtatcagcaagctgaagtgatacgc
gagaggactggatattgtgttgggcactactgtggggagatggggcaggatttctgggat
tctagaaaatggcaacgcgagtttgagtcaaaacaggtacttgtaatgacagctcagatt
ttgttgaacatccttaggcacagtattattaaaatggatgccatacaccttctgatttta
gatgagtgccatcatgcagtgaaaaagcacccatattctctagtcatgtcagaattttat
cacaccactccaaaggacaagaggccagttgtgtttggcatgactgcttcacctgttaac
ttaaagggagtgactagccaagaagattgtgctatcaagatacgaaatcttgagagtaaa
ctggattgcatagtatctacaatcaaagaccggaaagagcttgagaaacatgttcccatg
ccatctgaagtcattgtccactatgacaaagcagccactcttttgtctttccatgaacag
atcaaacaaatggaagccacagttgaagaagctgcgctttctagtgctaagagaactaaa
tggcagttcatgggagctagggatgctggctctagagatgagctgcgccttgtctatggt
gtttctgagcgtacagaaagtgatggtgcagctaatttaattcagaagttgagagctata
aattatgctctgggtgaactaggacaatggtgtgcttacaaggttgcacagtcatttttg
acggcactacagaatgatgagagggcaaactatcaggttgatgttaagtttcaagagtca
tatttgaaaaaggttgttgatttgttacactgccagttgactgaaggggctgcaatgaaa
agtgataataatgatgttgaaatgcctaatgctgaaaaccacaagccaaatgaacttgag
gagggggagctacctgacagtcatgctgtttctgtaggtgaacatgtagatgaagttatt
ggtgctgcggtggctgatggaaaagttactcctagggtgcaggctttgatcaaaatactt
ctcaagtatcagcacactgaggattttcgtgctatcatatttgtagagcgagtggttaca
gcattagtcctccctaaggtttttgccgagcttccatccttaggctttatacggtgtgca
agcttgataggtcataacaataaccaagagatgcggtcatgccaaatgcaggatacaatt
gcaaaatttcgtgatggccgtgttacgctgctagttgcaactagtgtagcagaggaagga
cttgatattcgacagtgcaatgttgtcattcgctttgaccttgcaaagactgttttggct
tacatacagtctcggggtcgtgctagaaagcctggatctgactacatattgatgcttgaa
aggggaaatttgtcgcatgaagcgttcttgaaacatgctcggagtagtgaggagacattg
agaaaagaagctattgagagaactgatctcagccatcttgatggtacttctatgataagc
cctgttgatacatcacctgattctatgtatcaggttgaatccacaggtgctgttgtcagt
ttgaactctgcagttggactcatacatttttactgctcacagctgccaagtgacagatac
tcgattcttcgtccggaatttattatggaaaagcatgagaagccagagggttcaacagaa
tattcttgcaagcttcagctcccttgtaatgctccatttgagaagcttgaaggccctata
tgcagttcaatacgtctggcacagcaggctgtttgtttagctgcttgtaagaagctacat
gaaatgggtgccttcacagatatgcttttgcctgatagaggaagtggggaaagagagaag
acagaacaaaatgatgaaggtgatccactccctggaacagcacgccatagagaattctat
cctgaaggggttgctgaaattctgcggggagaatggattttatctggaagagatggttgc
caaagctcacagtttattaagttatatatgtattctgtaaactgtgtgaacattgggact
tcaaaggacccttttgttacacaactttcaaattttgctcttatttttggcaatgagctg
gatgcagaggttttatcgacgacgatggatctctttgttgctaggacaatgataacaaag
gcatctctcgtattccgcggaccaattgaaattacagaaagtcagctggtcctgctgaag
agctttcatgttaggcttatgagcattgtacttgatgttggtgttgatcccttaactaca
ccttgggatccagcaaaagcatacctctttgtccctgttggggctgagaaatgtatggat
gctttaagagagatagattggaccttagttaacagcattgtgaactctgatgcctggaac
aatcctctgcagagggcacgcccagatgtctatctgggcactaatgaaaggactcttggc
ggagataggagggaatatgggttcgggaaattgcgtaatggatctgcttttggacagaag
gcccatcctacttatggtattagaggcgccattgctgattttgatgttgtcaaagcatct
ggattagttcctgctcgtgatagggggcattttaatgattatcaaaaccaaggcaagttg
ttcatggcagattcattatgggatgctaaagatcttgctggaatggttgtaactgctgcc
cactcaggaaagaggttctatgtggacagtatttgctacaacatgaacgcagaaaattca
ttccctaggaaagagggctacctgggtccattggagtacagctcgtatgctgattactac
aagcagaagtatggcgtggagttaatttataagaaacagcctcttatacgggcacgtggt
gtttcatattgcaagaatctactttctcctagatttgagcattctgaagctaacaatgga
gagttctcagagaaccttgacaaaacatactatgtatatttaccacctgaattgtgcctt
gttcatcctcttcctggatcacttattcgtggagctcagaggttaccctcgataatgaga
agggtggagagcatgcttcttgcaattcaactgaaggacataattggttatccggttcct
gcaaataagatattagaagccttgactgctgcatcatgccaggagacattctgctatgaa
agagcagagctgctgggtgatgcatacttgaaatgggttgtaagtagatttcttttccta
aaatatcctcaaaagcatgaggggcagctcacaaggatgcggcagcagatggttagcaac
atgatcctgtaccaatatgctctgaataaaagcctccaaacttatatccaagcagatcga
tttgctccatcaaggtgggcagctccgggagtgttgcctgtatttgacgaagaaacaaga
gattctgaaccatccatctttgaggaatctagtcctcgttgtgaattgcacaaggattct
tatgaggactatgcggatagcatgcaagaagacggtgaaattgagggagattctagctgc
tatcgtgttctgtctagcaaaacattagcagatgttgtggaagcacttattggtgtctac
tacgtagcaggagggaaaatcgctgcaaaccacctgatgagatggatcgggatccatgca
gagttggatcctcaggagatccctacttcaaagccatatatcatacctgagagcataatg
aaaagcattgattttgacacattagaaggtgcactcggtatcaagtttcagactaaaggc
ttacttgttgaggctatcacacatgcatcgaggccatcatctggtgtttcctgttaccag
cgcctggaatttgttggggatgctgtgttggatcatctaattacaaaacacttatttttc
acttatactgacctacctcctggccgcttgactgacttgagagctgcagctgttaataat
gagaactttgcaagggttgcagttaagcataagctgcatgtacatcttcgccatggatcg
tctgcattggagacacagattcgggagttcgtaaaggatgtccaggaggagctttcaaaa
ccaggtttcaattcttttgggcttggggattgtaaggctcctaaggtgcttggagacatt
tttgagtctattgctggtgcaatattcctggatagtgggtatgatacctcgatagtctgg
aaggtttttcagcctttacttgatccaatggtaacaccagacacccttccaatgcatcct
gttagggagctccaagagcgctgccagcagcaagctgaaggattagaatacaaagcatcc
cgcacaggcaatgtagctaccgttgaagtctttgttgatggtattcagattggtgtagct
caaaacccacagaagaagatggcacaaaagttggcagcgagaaatgcgcttgttgtcttg
aaggagaaggaaaccgcagcaaagaaagataccgaaaaggacggtgagaagaaaaatggt
tctcagatgttcactaggcagaccctgaacgacatctgcttgagaaagcagtggccaatg
ccacaatacaggtgcgtaaacgagggcggccctgcccatgccaaaagatttgtttatgca
gtaagggtgaatacatctgaccgtggatggactgacgagtgcattggagagccaatgccg
agtgtgaagaaggctaaggactctgctgccgttcttcttcttgagcttttgaataggaat
taccaacacaagcctgacggcaaatag
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