Panicum hallii (Hall's panicgrass): 112877874
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Entry
112877874 CDS
T07366
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112877874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112877874
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112877874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
DZR
Motif
Other DBs
NCBI-GeneID:
112877874
NCBI-ProteinID:
XP_025798034
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All DBs
Position
9:complement(12594064..12600056)
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AA seq
680 aa
AA seq
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MPRKVVSGPDYDDDYNDYDEYDDDYDEYDDTRYGNDQHPVQKGKESLKKSSTMVPVHWTC
SMCTFNNHESMTYCEMCGVFRETFFKSAKDGSLKDAVNAASSEPRACAAPKTDSAKTPMK
TRGVHSDGDSARKHASTSCDKANSTQLPSAGSSLGAEKKKKTPVVSEEIPVERTALLVPG
HFQLKHDKSSGASSSSQNDYVNQKLSSDISQLNVHKNNVNVTKPCLPEEYKPEKWMLADQ
ESGALSQLNLAIVGHVDSGKSTLSGRLLHLLGRISRKDMHKNEKESKEKGKGSFAFAWAM
DESSEERERGVTMTVGVAYLETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDAST
GSFEAGMDGEGGKSVGQTKEHAQLIRSFGVEQLVVAVNKMDAVAYSKERFEFIKLQLGSF
LRSCNFKDSAITWIPLSAVENQNLIKPPSDARLTSWYQGFCLLDAIDSLQLPSRDVTKPL
ILPICDVIKSQSTGQLAAFGKLETGAIQNGSKVLVLPCGVEATVKNIERDTNSCSIARAG
DNVAVSLQGIDGNQLIPGGVLCHPGFPVAVANRLELKILVLDIAIPILVGSQVEFHIHHV
KEAARVTKIIALLDKTGKPSKSAPRFLKSKQNAVVQIALDGAVCVQEFSKSRALGRAYLR
SSGRTIAVGVVNRVIGQDEN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaagttgtatctgggcctgactatgatgatgattacaatgactatgatgag
tatgatgatgattatgatgagtatgatgacaccagatatggaaacgatcaacatcctgtt
cagaagggaaaagaatcattgaagaagtcctcaactatggtgcctgtgcattggacgtgt
tccatgtgcactttcaataatcatgaaagcatgacgtactgtgagatgtgtggggttttc
cgtgaaacctttttcaaatctgccaaggatggttcattaaaagatgcagtcaacgcagcg
tcaagtgagcctagggcatgtgctgcaccaaaaacagattctgccaagacgccaatgaag
actcgtggtgtacattctgatggtgattctgcgagaaagcatgctagtacatcatgtgat
aaagccaattccacacaattaccatctgctggtagctcattaggtgctgaaaaaaagaag
aaaactcctgtagtttctgaagaaatacctgtggaaaggacagctctattggtccccggt
catttccagctgaagcatgacaagagtagtggggctagcagttcctcacagaatgattat
gtgaaccagaaactctcttctgacataagccagctaaatgtacacaagaacaatgtgaat
gttacaaaaccttgtttgcctgaagagtataagcctgaaaagtggatgttagctgatcag
gagtcaggggcgctgagccagctaaaccttgcaatagtgggtcatgttgattcaggcaag
tcgacactatctgggagattactgcatctattaggaaggatatcgagaaaagatatgcac
aagaatgagaaggagtcgaaagagaaagggaagggatcatttgcttttgcatgggccatg
gatgagagcagtgaagaaagggaacgaggtgtgacaatgacagtaggtgtggcttatctg
gagacgaagaaataccgtgtggttttgcttgactcacctggccacaaagactttgtgcca
aatatgatatctggtgcaacacaagctgatgcagctattcttgtggttgatgcttcaact
ggttcttttgaagctggcatggatggtgagggaggaaaaagtgtcggtcagaccaaagag
catgctcagcttattagaagctttggcgttgaacagcttgttgtcgcagtgaacaagatg
gatgcagttgcatactcaaaagaaagatttgagttcatcaaactacaacttggcagtttt
ctgcgctcttgcaacttcaaagactcagctattacctggattcctcttagtgctgtagaa
aatcaaaatttgatcaaacctccttcagatgctcgtttgacctcctggtatcaagggttc
tgtctcttggatgctatagattccctgcagcttccttctcgggatgttacaaagcccctc
attcttccaatctgtgatgttatcaagtctcagtcaacagggcagttggcagcttttgga
aaattggaaactggggctattcaaaatggttcaaaggtgttagttttaccttgcggggta
gaagcgacggtgaaaaacattgagcgggacactaattcatgcagcatagcaagagctggt
gacaatgtggcggttagtttacagggtattgatgggaatcaactaatacctggcggggtg
ctttgccaccctggtttccctgtggctgtagctaaccgcttggagcttaagattctagtt
ctggatattgccattccaattcttgttggttctcaggtggagtttcacatacatcatgtc
aaggaggccgcgagagtaacaaaaatcattgctttgcttgacaagactgggaaaccaagt
aaatcagcacctcgatttcttaaatcaaaacagaacgctgttgtgcagattgccctcgat
ggggcggtctgcgttcaggaattctccaagagccgagcacttgggagggcatacttaagg
tcatctggtcgcacaatcgctgttggtgtagttaatcgggtaattggccaagatgagaac
tag
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