Panicum hallii (Hall's panicgrass): 112877975
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Entry
112877975 CDS
T07366
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112877975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112877975
Enzymes [BR:
phai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112877975
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112877975
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112877975
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
112877975
NCBI-ProteinID:
XP_025798134
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All DBs
Position
9:complement(70471584..70478433)
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AA seq
680 aa
AA seq
DB search
MTQVKPAPGGRMLTVLRVHLPSEIPIVGCEITPYVLLRRPDGGIFTDDVSEASPVDGYFM
RYKWYRIQSDRRAAVCSVHPTEQATLQCIGCLKSKIPVAKSYHCSAKCFCDAWQHHRVLH
ERAISALNENGTEEEELFGRFGSGSSSSGIISAALSGSTPNLSQSSGFNNGPTPVYPTGT
EKSSGETWFEVGRSRTYTATADDIGHVLRFECVVVDLETRGTVGAPTSVMTSRVIPAPTP
TPRRLIPVNAADAMGHFDLDSRASSFGTFTVLSYNILADTYATSDTYSYCPTWALSWAYR
RQNLLREIIGYHADIICLQEVQNNHFEEFFAPELDKHGYQALYKKRTTEIYAGTPQAIDG
CATFFRRDRFSHVKKYEVEFNKAAQSLTDAIIPAAQKKLALTRLVKDNIALIAVLEAKFG
NHGTENPSKRQLLCVENHALFCQITSVRCSTIFDLTGMIRKPRSLPNSGNREINFSDRLE
NSFQLTGSKHNYFDKANTHINIHHDLKDVKLWQIHTLLKGLEKIAVSADIPMLVCGDFNS
IPGSTSHGLLAMGKVDQLHPDLAVDPLGILRPLSKLTHQLPLVSAYSSFARMASVGYDLD
HQRRRMDPTTNEPLFTNCTRDFTGTIDYIFYTADSLTVESLLELLDEDSLRKDTALPSPE
WSSDHIALLAEFRCTPRVRR
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggtgaagcccgcccctgggggaaggatgctgaccgtgctgcgggtgcacctc
ccgtcggagatcccgatcgtcggctgcgagatcacgccgtacgtgctcctgcggcgcccc
gacggcggcatcttcaccgacgacgtgtctgaggcctctcctgtggatgggtacttcatg
cgctacaagtggtaccgcatacaaagtgatcgaagagccgctgtctgcagtgtacaccca
acagaacaagcaacgcttcagtgcatagggtgtctgaagtcaaaaatacctgttgcgaag
agctaccattgttctgctaagtgcttctgtgatgcctggcaacaccacagggttctgcac
gaacgtgctatcagtgctttaaatgaaaatggaacagaagaggaggagttatttggcaga
tttggcagtggcagttcgagttcagggattattagtgcagcgttgtctggttcaacacca
aatctttcgcagagctcaggttttaataatggacctacacctgtgtatccaacaggcact
gaaaagagttctggtgaaacttggttcgaagtgggacgctctcggacatatacagcaacc
gctgatgatattgggcatgtactaagatttgaatgtgtagttgtggatttggaaacaagg
gggaccgtcggagctcctacttccgtcatgacatcccgtgtgatcccagcaccaaccccc
actccacgtcgcttgatccctgtgaatgcagctgatgctatggggcactttgatttagat
agccgggcttcttcttttgggacattcactgtgctatcctacaatattctcgctgataca
tacgcgacaagtgatacgtacagctattgtccaacttgggcactttcatgggcttacaga
agacaaaatttactgcgtgaaattattggttaccatgctgacattatctgccttcaggag
gtacaaaataatcactttgaggaattttttgcaccagagcttgataaacatggatatcaa
gcactttataaaaaaaggacaacagagatttacgcaggaactcctcaagcaattgatggt
tgtgctacttttttccgaagggacagattttcgcatgtcaaaaaatatgaggttgagttt
aacaaggctgcacagtctttaactgatgctattattcctgccgcccaaaagaagttggct
ctaactcgtttggttaaggataatattgcgttaattgcagttttagaagctaaatttggt
aaccatgggactgaaaatcctagtaaaagacagcttctttgtgtggagaaccatgctctc
ttctgccagattacatctgtaaggtgttcaaccatctttgacctgacgggaatgataagg
aaaccaagatccttaccgaacagtggaaatagagaaataaatttcagtgacagattggag
aatagttttcagttgacgggtagcaaacataactattttgacaaggcgaatacacatata
aatatccatcatgacctgaaagatgtgaagctgtggcagatacacaccctcctaaaagga
ttggaaaaaatagccgtaagtgcggatattcctatgttggtctgtggagattttaattca
atccctggaagtacatcacatgggcttcttgctatgggcaaagttgatcaattgcatcca
gatctggcagtagatcctcttggaattttgcgtccactaagcaaactgacacaccaactt
cctctggtcagtgcatactcgtcttttgcgaggatggctagtgttggttatgatttggat
caccagcgaaggaggatggaccccacgacaaatgagcctttgttcacaaattgcacaagg
gatttcactggtaccatcgattacatattttacacagcggattcattgacagtggagtcg
ttactggaactattggatgaggatagcttgagaaaagacacggctcttccttctcctgaa
tggtcatcggatcatatcgcactcctagcagaattccggtgcacgcctagagttagacga
taa
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