Panicum hallii (Hall's panicgrass): 112878112
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Entry
112878112 CDS
T07366
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112878112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112878112
Spliceosome [BR:
phai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
112878112
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
DSE1_N
Beta-prop_WDR75_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_Aladin
PRP4
WDR90_beta-prop_4th
Beta-prop_TEP1_C
CFAP251_N
Beta-prop_EIPR1
Beta-prop_RIG_2nd
PAC11
Beta-prop_WDR41
ASA1
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_SCAP
eIF2A
Beta-prop_NOL10_N
Beta-prop_Nup120_160
Tricorn_2nd
WD40_like
Beta-prop_ACSF4
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
112878112
NCBI-ProteinID:
XP_025798301
LinkDB
All DBs
Position
9:complement(61865911..61869596)
Genome browser
AA seq
525 aa
AA seq
DB search
MENPRPQPPAPTPPMAPLPVPVHPPIAPIPVPPPRAPIPAAASVTSTSASAAGGGSGDEV
EYEVSDDHRAARERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREME
RRDRLRALMVRLEADGQVDRLLRAQEDDQAARAGEEEEEEEQIQYPFFTEGTQDLLNARV
DIAQYSLPRAKARIERAKRRHEDPDEDPEAEADLVVKQAGEFVLECSEIGDDRPLTGCSF
SRDASLLATSSWSGLIKVWSMPQITKVATLKGHTERATDVAFSPADDCLATASADKTAKL
WKPDGSLLVSFDGHLDRLARLAFHPSGKYLGTTSFDKTWRLWDINTGKELLLQEGHSRSV
YGVSFHPDGSLVASCGLDAYARVWDLRSGRLFFTLRGHVKPVLGVSFSPNGYLVATGSED
NFCRIWDLRKREMLYSIPAHKSLISHVKFEPQEGYYLATSSYDTKAALWSARDYKPIKSL
VGHESKVTSLDISGDGQQIVTVAHDRTIKIWSCRSSTQDNAMELD
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccccaggccgcagcccccggcccccacccctcccatggctccgctccccgtc
ccggtccacccgcccatcgcccccatccccgtccctccgccccgcgcgcccatccccgcc
gccgcctccgtgacctccacctccgcctccgccgcggggggtgggagcggcgacgaggtc
gagtatgaggtctccgacgaccaccgtgctgcccgggaacgccacgagcgcgcggtgcag
gagctcctccagcggcgccgcgcgtacgccatggccgtgcccaccaacgactccgccgtg
cgggcccgcctccgccgcctcggcgagcccatcacgctcttcggcgagcgcgagatggag
cgccgcgaccgcctgcgcgccctcatggtgcggcttgaggccgatggccaggtcgatcgc
ctcctccgcgcacaggaggacgaccaggccgcgcgcgcaggtgaggaggaggaggaggag
gagcagatccagtaccccttcttcaccgagggcacgcaggacctgctcaatgcgcgcgtc
gacatcgcacagtactctctgccccgcgccaaagccaggatcgagagggccaagcgccgc
cacgaggatcccgatgaggacccggaggcagaggccgaccttgtcgtgaagcaggctggg
gagtttgtgcttgagtgcagcgagattggagatgatcgcccgctcaccggctgctccttc
tctcgggatgcatcactgcttgccacaagttcctggagtggattaatcaaagtatggagc
atgccacaaataactaaagttgcaaccctgaaaggtcatacagaacgtgcaacagatgtt
gccttttctccagctgatgactgcttagcaacagcttcagctgataaaactgcaaaactt
tggaaaccagatgggtcacttctagtgtcctttgatggtcaccttgatcgtcttgctcgc
cttgcttttcacccatctggaaagtaccttggtaccactagctttgacaagacttggaga
ttgtgggacatcaatactggaaaggaactgctgcttcaagaggggcacagcagaagtgtt
tatggagttagctttcacccagatggttctttggtggcatcttgcggtcttgatgcatat
gctcgagtgtgggatctgagatcgggaaggttgttcttcacccttcggggacatgtgaaa
cctgtcctaggagtcagcttctctcctaatggttatctggtagcaactggaagtgaagac
aatttctgtcgaatatgggatttgaggaaaagggaaatgttatattctataccagctcat
aaaagtcttatttcacatgtgaaatttgaaccccaagaagggtattatttagcaacctct
tcatatgacactaaagcagctctctggtcagctcgggattacaagccaatcaaaagcttg
gtgggccacgagtcgaaggttacgagtttggatattagtggagatggacagcagattgtg
actgtggcgcatgatcgtacaataaagatttggtcatgcagaagcagcactcaggataat
gcgatggaattggattga
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