Panicum hallii (Hall's panicgrass): 112879428
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Entry
112879428 CDS
T07366
Name
(RefSeq) THO complex subunit 4B-like
KO
K12881
THO complex subunit 4
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
phai03015
mRNA surveillance pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112879428
09122 Translation
03013 Nucleocytoplasmic transport
112879428
03015 mRNA surveillance pathway
112879428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112879428
03041 Spliceosome [BR:
phai03041
]
112879428
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112879428
TREX complex
112879428
Spliceosome [BR:
phai03041
]
Complex C
Other components
EJC/TREX
112879428
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112879428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
112879428
NCBI-ProteinID:
XP_025799460
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All DBs
Position
2:6093206..6098616
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AA seq
252 aa
AA seq
DB search
MSSGLDMSLEDLIKQSKSRPKSNPASSSGPARRAPPPARAAPYPPAAPKAHRAAADSPYG
VYSEHIATMAAVAPPQPAAARSLETGTKLHISNLDAGVTVEDVQELFSEVGELKRYSMNY
DKDGTSKGTAEVVFARKVDALDAIKRYNGVLLDGKPMNIELIGNNAEPPPMPPVIHNRPL
QNYNDIHSSVPQNQRGVLRRAPQSNGRGGGSQSSGGRGQGKGRGQDRNRTPLSAADLDAE
LDKYHASAVKEK
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtggcctggacatgtccctggaggacctcatcaagcagtccaaatcccggccc
aagtccaaccccgcctcctcgtcggggcccgcccgccgcgcgccacccccagcccgcgcg
gcgccctacccgccggccgcccccaaggcccaccgcgccgccgccgactcgccctacggg
gtctactccgagcacatcgccaccatggccgcggtcgcgccgccgcagccggccgccgcg
aggtcgctcgagacggggacgaagctgcacatctccaaccttgacgccggcgtcaccgtc
gaggatgtccaggaactcttctcagaggtcggtgagctcaaacgttattcgatgaactat
gataaagatgggacatccaagggaactgcggaagttgtctttgcaaggaaggtggatgct
ttggatgccatcaagagatacaatggcgttctacttgatgggaagccaatgaatatagag
ctcattggaaacaatgccgaaccacctcccatgccaccagtaatacacaaccgtcctttg
cagaactataatgatatccatagcagtgtgcctcaaaaccaaagaggtgttctgcgaaga
gcacctcaaagcaatggtcgtggtggaggcagtcagagcagtggcggtcgcggacagggg
aaaggccgagggcaggaccggaaccgcacgcccctatccgcggccgatcttgatgctgaa
ctggacaagtaccatgcatcggcagtgaaagagaaatga
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integrated database retrieval system