KEGG   Panicum hallii (Hall's panicgrass): 112879428
Entry
112879428         CDS       T07366                                 
Name
(RefSeq) THO complex subunit 4B-like
  KO
K12881  THO complex subunit 4
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03013  Nucleocytoplasmic transport
phai03015  mRNA surveillance pathway
phai03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112879428
  09122 Translation
   03013 Nucleocytoplasmic transport
    112879428
   03015 mRNA surveillance pathway
    112879428
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phai03019]
    112879428
   03041 Spliceosome [BR:phai03041]
    112879428
Messenger RNA biogenesis [BR:phai03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     112879428
    TREX complex
     112879428
Spliceosome [BR:phai03041]
 Complex C
  Other components
   EJC/TREX
    112879428
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    112879428
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 112879428
NCBI-ProteinID: XP_025799460
LinkDB
Position
2:6093206..6098616
AA seq 252 aa
MSSGLDMSLEDLIKQSKSRPKSNPASSSGPARRAPPPARAAPYPPAAPKAHRAAADSPYG
VYSEHIATMAAVAPPQPAAARSLETGTKLHISNLDAGVTVEDVQELFSEVGELKRYSMNY
DKDGTSKGTAEVVFARKVDALDAIKRYNGVLLDGKPMNIELIGNNAEPPPMPPVIHNRPL
QNYNDIHSSVPQNQRGVLRRAPQSNGRGGGSQSSGGRGQGKGRGQDRNRTPLSAADLDAE
LDKYHASAVKEK
NT seq 759 nt   +upstreamnt  +downstreamnt
atgtcgagtggcctggacatgtccctggaggacctcatcaagcagtccaaatcccggccc
aagtccaaccccgcctcctcgtcggggcccgcccgccgcgcgccacccccagcccgcgcg
gcgccctacccgccggccgcccccaaggcccaccgcgccgccgccgactcgccctacggg
gtctactccgagcacatcgccaccatggccgcggtcgcgccgccgcagccggccgccgcg
aggtcgctcgagacggggacgaagctgcacatctccaaccttgacgccggcgtcaccgtc
gaggatgtccaggaactcttctcagaggtcggtgagctcaaacgttattcgatgaactat
gataaagatgggacatccaagggaactgcggaagttgtctttgcaaggaaggtggatgct
ttggatgccatcaagagatacaatggcgttctacttgatgggaagccaatgaatatagag
ctcattggaaacaatgccgaaccacctcccatgccaccagtaatacacaaccgtcctttg
cagaactataatgatatccatagcagtgtgcctcaaaaccaaagaggtgttctgcgaaga
gcacctcaaagcaatggtcgtggtggaggcagtcagagcagtggcggtcgcggacagggg
aaaggccgagggcaggaccggaaccgcacgcccctatccgcggccgatcttgatgctgaa
ctggacaagtaccatgcatcggcagtgaaagagaaatga

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