Panicum hallii (Hall's panicgrass): 112879943
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Entry
112879943 CDS
T07366
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
phai
Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phai03036
]
112879943
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
112879943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
Cnd1
INTS1_R4
zf-RING_2
PHD
Motif
Other DBs
NCBI-GeneID:
112879943
NCBI-ProteinID:
XP_025800170
LinkDB
All DBs
Position
2:complement(465396..479328)
Genome browser
AA seq
1761 aa
AA seq
DB search
MDPGAAGAGGGGRAGFERACRLPNTVHSEIAPALPLPTLPPALGFDDLRDDEPLAAPDRP
DMIMQAANIARILAETDVSHLGFTEADNVDVDPSQCSWLWREVLKHNPDAFKVKPPAPPP
TSQGAREGPDYQIQSEKHFEHFTPNMNKARKEPVFPLDDINSRREHLRNELTPDSVASKK
PKVRKKEIDNSVSSSGPSIPNNQEVIDNFCEMVEDFCRRVEIPYDVDGGDWLSIPLNDVK
FLVNEITSVRSKRILHEVPMATVTRLLDVIDRQIRCSQGLSIDEKENSDAEPLVFSALES
VHAALAIMTHHDMPKQLYREELIERIIDFSRRQITDCMAASNPTFRAIHKPAENVANDGD
DDEEDVENGPVSKKRRTTANLSMRKSSNRVSASVYSAVQKLCLILGFLKELLTTVRLSDS
CILQLAKTCFTTFLVDNMQLLQLKAIGVICTVFSSYTQHRSYLVDETIVLLRKLQFSRNA
VRTYHLADEEQKQIQMITALLVHLVQFSAIVPDSLKGAVDWSTIVDSPVDASYPIKCHEA
ATEACCLFWTSVLQRFTAAKSQDMSEAKGIIDNLVQDLLTILNLPEYPAAASILEVLCVL
LLQNAGLKSKDTNARCFAIDLLGGIASRLKRDSVACSDEKLWILQELTDAGSDGSKILKN
KCCVCLGGRGINIACDVCGRCFHSDCMGSGSQDNLQRDSVCPLCFCNQQLSVLQSYCQLQ
TKENGKRTAASVSKKSSAPSEVPAVDIVQHILLSYLQEAGPQDDGNLFTRWFYLCIWNKD
DPHSEEKIIYYLARLKSKEILRDSGNCLVISRDWVKKICLALGQKNSFSRGFDKILALLL
ASLRENSPVIRAKALRAVSSIVEADPEVLGDKRVQSAVEGRFCDSAISVREAALELVGRH
IASHPDVGLKYIEKVAERIKDTGVSVRKRAIKIIRDLCASNPNTDTTHAFVEIISRVNDE
ESSVQDLVCKTFYELWFEEPTGSHKHLVADGSSVPMEIAKKAEQIVDMLRKMPNHQPLIT
VIKRNLTLDFLPQSTKAAGINSSMVASLRKRCELICKRLLERILQVEEGAANEMEIHALP
YIVALQAFCIVDPTLCIPVTDPSKFVVTLQPYLKIQIDNKSAAQLLESIIFVIDAVLPLI
RKPPQTVVVELEQDLKQMIVRHSYLTVVHACIKCLCALSKSAGRGPGLLEYLVNVFYKHL
SGTNSDSQLLGRSLFCLGLLLRYGYQLMLTSENQLDFPKIINLLQRRYLLRDDFNLKVRA
LQTLGYILIAKPEFMLQKEIMNLIEATLSSGVDHRLKIQGLQNLYEYLRDAESQLTAEST
GKPPVQSAINGGSEVPVAAGAGDTNICGGIIQLYWSSILERCMDTNDQVRQSALKIVEVV
LRQGLVHPITCVPHLIALEMDPLEGNSKLAHHLLMNMHEKYPSFFESRLGDGLQMSFIFF
ETTVSNHKLAANIKSNPIAFVKPGITRIYRLIRANRNSRNKFVHSIVRKFEPDGRNRSTV
SFLVYCAEVLASLPFSCPDEPLYLIYDINRVIHFRAGAIETNLKKWTSMDQPQDAAGMAT
LPGESHVVMHEPGVYYSNNVGYIPERMNNNPCSTSDVDMAKVQEDCYDAIALQLLLKLKR
HLKIVYSLTDARCQAFSLKEPPKSGETLSKQNVPFNIGNNISLPSCLQDVASVYQDFKTV
LREDSMDFGVYTPSVQRKRPTPRSTSRVRRTAATSVSRARGGGRGDDDDTDDDDWAGGAR
VLDFSAQASNGGRVTRQRVQV
NT seq
5286 nt
NT seq
+upstream
nt +downstream
nt
atggaccccggcgccgccggcgccggcggagggggccgggccggcttcgagcgggcgtgc
cgcctgcccaacaccgtccactccgagatcgcgcccgcgctgccgctccccaccctcccg
cccgcgctcggcttcgacgacctccgcgacgacgagcccctcgccgcccccgaccgcccc
gacatgatcatgcaggccgcaaacatcgcccgcatcctcgccgagaccgacgtctcccac
ctgggctttactgaagcggacaacgtcgacgtcgatcccagccagtgctcctggctctgg
agggaggtgctcaagcacaaccccgacgccttcaaggtcaagccccctgcgcccccgcct
acttcgcaaggtgcacgtgaaggcccagattatcaaattcaaagtgagaagcattttgag
cattttacacctaatatgaacaaagcacggaaagaacctgtatttcctctggatgacatc
aactcacgcagagagcatcttcgtaatgaactaaccccagattcagtcgcttcaaagaag
ccaaaagttaggaagaaagaaattgataattctgtttcaagttctggccccagcattcct
aataaccaagaagtaatcgacaacttctgtgagatggtggaggatttctgcagaagagtc
gaaattccttatgatgtagatggcggtgactggttgtcaataccacttaatgatgttaag
tttcttgttaatgaaattacatcagttcgatccaaaaggatattgcatgaggttcctatg
gctacagttacaaggttattagatgtaatagaccgtcagatccgatgttctcaaggtttg
tcgatagatgagaaggaaaattctgatgctgaacctctggttttctcggctttggagtcc
gttcatgcagcgttagcaattatgacccaccatgatatgccaaagcagctgtatcgagaa
gaacttattgagcgaattattgatttctcaagacgtcagatcactgattgtatggcagca
agcaacccaaccttccgagctatccacaaaccagctgaaaatgttgcaaatgacggagat
gatgatgaagaggatgtggaaaatggaccggttagcaaaaagagacgtactactgctaat
ctaagcatgagaaaatcttcaaacagagtttctgcttctgtttactctgctgtgcagaaa
ctatgcttgatattgggctttctcaaggaactgctcacaacagtgcgcttgtcagatagt
tgtattctgcagttagcaaaaacctgctttactacattcttggtggacaatatgcagcta
ttacaattgaaagcaattggggttatttgcacggttttttcatcatacactcaacacagg
agttacttggttgatgaaacaattgtcctgcttcgtaagttgcagttttcgagaaatgct
gttagaacctaccatctggcagatgaagaacaaaagcaaatccagatgataacagcactg
ttagttcacctggttcagtttagtgcaattgttcccgatagcttaaagggagcagttgat
tggagcactattgtcgattccccagttgatgctagttatccaattaaatgccatgaagcg
gcaacggaggcttgttgccttttctggactagtgtccttcaacgttttactgctgctaaa
tctcaagatatgtcagaagccaaaggaataatagataatcttgttcaggatttgctaaca
atactaaacttgccagagtatccagctgctgcttctattcttgaggttctctgtgtattg
ctgcttcaaaatgctggattgaaatctaaggacactaatgcgcggtgctttgccattgac
cttcttggtggtattgcatcgagattgaagcgtgattctgtcgcctgtagtgatgagaag
ctttggatattgcaagagctcactgatgcaggtagtgatggctcgaaaattttgaaaaac
aaatgttgtgtttgtcttggcggaagaggtataaatatagcctgtgatgtatgtggaaga
tgtttccattcagattgtatggggtctggtagtcaggataatttacaacgtgatagtgtc
tgccccttgtgtttttgcaatcaacaactcagtgtgttacagtcatactgccagttacaa
actaaagagaacggaaaaagaactgctgcctcggttagtaagaaatcttctgcaccatct
gaggtgccagcagtggatattgtgcaacatatactactgagttatctccaggaagctggt
ccacaagatgatgggaacctgtttactcgatggttctatctatgtatctggaacaaagat
gacccacattctgaagagaagattatctactatcttgctagattaaaatctaaggagatt
ctgcgtgattctggcaattgtttggtaatttccagagattgggtaaagaaaatttgcttg
gcacttggccagaagaattcattttcgaggggttttgataaaattcttgcccttcttttg
gctagcttgagagaaaattctcctgtaataagggcaaaggctttacgtgcggtcagcagt
atagttgaagctgaccctgaggtcttgggtgacaaacgtgtccagtctgccgttgaaggg
aggttttgtgattcggctatttctgttcgtgaagctgcccttgagcttgttggaaggcat
attgcttcacatcctgatgtgggcctaaagtatatcgaaaaagttgccgagcgaataaag
gacacaggagtaagcgttcgcaaacgtgcaattaaaattataagggatctttgtgcttca
aatccaaatacggacacaacacatgcctttgtggagattatttctcgtgttaatgatgag
gagtccagtgtacaggatcttgtatgcaaaacattttatgagctatggtttgaagaacca
actgggagtcataagcacttggttgctgatggtagttcagttccaatggagattgctaaa
aaggctgagcaaattgttgatatgttgaggaagatgcccaatcaccaaccccttattact
gttataaaacgtaacttgactcttgatttcctccctcagtcaaccaaggctgcaggcatt
aactcgtccatggtggcatcacttcggaagcgttgtgaattgatatgcaagcgcttgtta
gaaagaatattgcaggttgaggaaggagctgctaatgagatggaaatccatgctcttcct
tatattgttgccttgcaagcattttgtattgttgatcccaccctctgcattccagtaact
gatccttccaagtttgttgtgacgctacaaccataccttaagattcagatcgacaataaa
tcagctgcccagttgcttgaaagtataatattcgtgattgatgctgttcttccactcata
aggaagccaccacaaactgtggttgtagaacttgagcaggatctgaagcagatgatagtt
cgccattcctatttgacagttgtacatgcatgtatcaagtgcctttgtgcccttagcaaa
tcggctggtagaggtccaggattactggaataccttgttaatgttttctacaagcatctg
tcgggcactaattcagatagtcagctattaggtcgatccctgttttgtcttggactgctt
cttcggtatggttatcaattgatgttaacatctgaaaatcagcttgattttccaaagatt
atcaatttactccagagaaggtatcttctcagggatgatttcaacttgaaggttcgagct
ttgcagactttgggatacatacttatcgcgaagcctgaatttatgctacaaaaggaaatc
atgaatctcatagaagcaacactatcttctggcgtcgatcataggttaaagattcaagga
cttcaaaacctctatgagtatctccgagatgctgaaagccaacttactgctgagagtact
gggaagcctcctgtacagtctgcgataaatggtggaagtgaagttcctgttgctgctggt
gctggagacaccaacatatgtggtggtattattcaattgtattggagttctattcttgaa
aggtgcatggatacaaatgaccaagttcgccagagtgcacttaagattgttgaagttgta
cttcgccagggtttagttcacccgattacctgtgttccgcaccttattgcacttgaaatg
gacccactggaggggaactcgaagttggctcatcatctactaatgaatatgcatgaaaag
tatccttcattttttgaaagccgcttaggtgatggcctacaaatgtcatttatattcttc
gagaccacagtcagcaaccataaacttgcagcaaacatcaaatcaaatccgattgcattt
gtcaaacctggcataactagaatataccgtcttatccgtgcaaatcgaaattcaagaaac
aaatttgtccactcaatagttcggaaattcgagcctgatggccggaatcgctccacagtt
agctttcttgtatactgtgccgaagttcttgcctcactgccattctcatgccctgatgaa
ccactctatttgatatatgatataaatcgagtcattcactttagagcaggagcaattgag
actaatttgaaaaagtggacttccatggatcaacctcaagatgcagcgggtatggcaaca
ttgccaggagagagtcatgttgtcatgcatgagcctggagtatattacagcaataatgtg
ggatatattcctgaaaggatgaataacaatccttgcagtacatcagatgtagatatggcc
aaagttcaggaggattgctatgatgcaatagccctgcaactcctcctcaaattgaagaga
catttgaaaattgtttatagtctaactgatgcccgctgtcaggcattttctctaaaggaa
ccaccaaaatctggagaaacactctccaagcagaatgttccttttaacattggaaacaac
atcagtctgccgagctgcctgcaggatgtagcttctgtgtaccaggatttcaagacagtg
ctgcgtgaagattccatggacttcggtgtgtacaccccttctgtgcagaggaagcgccca
accccaagaagtacgtcgagagtaaggaggacagccgccacaagtgtttcaagagcccgt
ggcggtggccgtggtgatgatgatgatactgatgacgatgactgggctgggggggcaaga
gtgctggacttcagcgctcaggcaagcaatggtggccgtgtaacaaggcaaagggtccaa
gtatga
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integrated database retrieval system
