Panicum hallii (Hall's panicgrass): 112880072
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Entry
112880072 CDS
T07366
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112880072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112880072
03041 Spliceosome [BR:
phai03041
]
112880072
03036 Chromosome and associated proteins [BR:
phai03036
]
112880072
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112880072
Spliceosome [BR:
phai03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112880072
Complex B
112880072
Complex C
U2 SnRNP specific factors
112880072
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112880072
TFTC complex
112880072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
112880072
NCBI-ProteinID:
XP_025800328
LinkDB
All DBs
Position
2:complement(5006863..5017057)
Genome browser
AA seq
1363 aa
AA seq
DB search
MEASTADAGGASASSAAASSSSGPSTSASASVSADAGATHYLAKRVLRGSAVLHVAEGCF
RSPDSADVVLAKETSLELVAVGDDGVLKSICEQDMFGIVKDIGVLQWHSRHIGLIPQIEH
KDLLVVLSDSGKLSLLYFCPEMHRFFAIANIELSKPGNLRHQLGRVLAIDRESSFVAVSA
YEDKFALIHISVCQSPHGSGRGAIYDKKYFYPPENEEDVRTVSGASRTSIRGTIWTMRFI
STSQGEEYYPVLAMIINRKGSDVNDLSLFGHDSSSGVISHISSYSEIGPLAIDISEIPEM
LGFALLFRVGDALLLDLRNPRNVCCIRRISLTTSLIGEPVTVEDSCPGLDVDDDVAACAL
LELRDSANNILKDDGYMDIDGVDSRGSVKSRIVCSWSWEPPDPIRQGWARLLFCLDDGEF
HILEFTSDVEGVKLYTFEYVDRSLPCKPLLWMKNRMIIGFVEMGDGMIFKLGHRRLFLKS
TIQNVAPILDLAIADYHGEKQDQMFACCGMCPEGSLRVLRNGVNVEKLLRTEAIYQGVAG
LWTLRMKTNDAYHSFLVLSFVEETRILSVGLSFNDISDAVGFQPDVCTLACGLLADGLLV
QIHSKGVKLCLPTVYAHPEGAPLTSPICTNWYPDVTISVGAVGHNIVVVATSNPCCLYVL
GVRSSSSYQYELYERQHVQLQYEVSCISIPQEGLRSDNVTLSGGEHDDFCNNPSANVNVR
KFAVIGTHKPSVEIISVEPGEALRLLTIGTISVNNALGAPVSGCIPENVRFVAAERFYIL
AGLRNGMLLRFESEASERYFPGSFYKDSSIPSVTAFLQLISIRRIGITPVFLVPIHDSAN
ADIIVLSDRPWLLHAARHSLAYSSISFLPASHVTPVSSVDCPNGLLFVADSCLHLVEMVH
GKRLNAQKFSIGGTPRKVLYHNESRTLLVLRTGLSGASCSSDIVQVDPQNGVLLSRYKCE
PGETAKCMQITKIGSDQVLVVGTSRSAGRPMMSNGEAESSTKGRLIVLSLEAVESPRESS
SFIPTSSFNPSSHSGSPFHEIMGYTTEEFSSNSLCSSPDEFCCNQIQAEQMAGHLRSLSH
ATLSGAVLAVYPYLDRYVLAAAGNTIYVFGFANENPHRMKKCAVGRTRFTITCLKTFASR
IAVGDCRDGVLFYSYNESLRKLELIYSDPAQRLVGDIALLNCETAVVSDRRGSISVLSST
RLEVSESPQKNLAVNCSFYMGETAMSIQKAAFRYRLPIDDDTDPVLESAYDCIVASTLLG
SLFVMIPLTSEEHRLLQDVQERLSVHPLTAPVLGNDHAEFRQRGIPSGVPPILDGDMLVQ
FLELTGEQQQAILAHALPGKGPRRPVSVFEVLRTLERVHYALN
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggaggcctccaccgccgacgccggtggcgcctccgcctcgtcggcggcggcgtcctcc
tcctcgggcccctccacctccgcgtccgcgtccgtgtccgccgacgctggcgccacccac
tacctcgccaagcgggtgctccggggcagcgccgtgctccacgtcgccgaggggtgcttc
cgctcgcccgactccgccgacgtcgtcctcgccaaggaaacttcactagagctggttgct
gttggtgatgatggtgttttgaagtcaatctgcgaacaagacatgtttgggattgtaaaa
gatattggtgtcttgcaatggcactctaggcacattggtttaattccacagatagaacac
aaggatcttctggttgtgctttctgattccggaaagctttcccttctttatttttgtcct
gagatgcataggttcttcgcaattgccaatattgagttatccaaaccaggaaatctgagg
catcagctgggaagagttttagctatagatcgagaatctagttttgttgctgtcagtgcg
tatgaggataagtttgctcttatacatatttcagtgtgccagagtcctcatggttctggc
agaggtgccatttatgataagaaatatttttatccaccagaaaatgaagaggatgtaaga
actgtaagtggtgcatctaggaccagcatccgaggtacaatttggaccatgcgcttcata
tcgacatcccaaggtgaagaatactatccagttctggcgatgataatcaacaggaagggc
tctgatgtgaatgacttgtcattatttggacatgattccagcagcggtgttatcagccac
atctctagttattcagaaatcggaccattggcaattgacatatcagaaattcctgaaatg
cttggctttgcacttctgtttcgtgttggtgatgctttactgttggatcttagaaaccca
aggaatgtctgttgtatccgaagaattagcttgacaactagcctgattggagagccagtc
actgttgaagattcctgtccaggattagatgttgatgacgatgtggctgcttgtgctttg
ctagaattgagagattctgcaaataatatactgaaggatgatggttatatggacattgat
ggtgttgacagcagaggtagtgtgaaatcaaggatcgtttgctcatggagctgggaacca
cctgaccctatcagacaaggatgggcaaggcttctattttgcttagatgatggagaattc
catattttggaatttacttctgatgttgaaggagtcaagttgtacacctttgagtatgtt
gataggagtttgccatgcaaacctcttctgtggatgaaaaatagaatgataataggattt
gtagagatgggggatggtatgatctttaaacttggccatcgtagattgtttcttaaaagc
acaattcagaatgtagcaccaatattggatctagcaattgctgattaccatggtgagaaa
caggatcagatgtttgcatgttgtggtatgtgccctgagggctctttgcgagttttacgg
aacggtgtcaatgtggagaaacttctgaggactgaggctatttatcagggtgttgctgga
ttgtggactttgagaatgaagacaaatgatgcttaccactcttttcttgtgttatcattt
gtggaggaaaccagaatattgtcagtaggactaagttttaatgacatcagtgatgccgtg
ggattccagcctgatgtttgcactttggcgtgtggtttgctggctgatggtttgcttgtg
caaattcacagtaaaggtgtaaagctctgtttgcctacagtatatgctcaccctgagggt
gcccctttaacttctccaatttgcaccaactggtaccctgatgtcactatcagtgttggt
gctgtaggacataatattgttgttgtcgctacatcaaatccttgttgcctatatgtcctt
ggagttagatcatcttcgtcttaccagtatgaattgtatgagagacaacatgttcaattg
caatatgaagtatcgtgcatatctatcccgcaagagggattgagatctgataatgtaaca
ttgagtggtggagagcatgatgatttttgtaacaatccctcagctaatgttaatgtccgc
aagtttgctgttatcggaactcataaaccttctgtggaaatcatctccgtggaacctgga
gaagcattaaggttactgactattgggactatatcagtgaacaatgcgcttggtgctcct
gttagtggttgtatacctgaaaacgtgaggtttgttgcggctgagaggttttacatcctt
gcaggcttgagaaatggaatgctactaagatttgaatcagaagcaagtgagcgttatttt
cctggttccttctacaaggactcttctatcccttctgttactgcattccttcagttgatt
tcgatacggaggattggaattactcctgtattcttggtaccaatacatgattcagctaat
gctgatatcattgttctcagtgataggccttggctattacatgcggccagacatagtctg
gcatattcatccatttcgtttcttcctgcttctcatgtgacaccagtgtcatctgttgat
tgccccaatggtctactgtttgttgctgacagctgtttgcatttggttgaaatggttcat
gggaagcgattgaacgcacaaaagttttcaattgggggaactccaaggaaagtgctatac
cataatgaaagcagaacactgttggtactaagaactgggctaagtggtgcatcatgttct
tcggatattgtccaagtagatccacaaaatggggtattgctttccagatataaatgtgaa
cctggtgaaacagcaaagtgcatgcaaattacaaaaataggaagtgatcaagttttagtt
gttggaactagtagatctgctggacggccaatgatgtcaaatggtgaagcagaaagcagt
accaaggggcgcctgattgttttaagcttggaggccgttgaaagtccacgtgagagcagt
tcatttattccaacttctagttttaatccatcttcacattctggctctcctttccacgag
attatgggatatacaactgaagaattttctagtaacagtctgtgcagcagtcctgatgag
ttttgctgcaaccagattcaagctgaacaaatggcaggacatttgaggtcattgtctcat
gctacattgagtggtgcagttcttgctgtgtacccatatctagatcgttatgtgctggca
gctgccggtaatacgatttatgtatttggttttgcaaatgaaaatccccataggatgaaa
aaatgtgctgttggtagaacaaggtttacaataacttgtttgaagacatttgcatcacgg
attgcagttggtgattgccgtgatggtgttctattctattcttataatgagagtcttagg
aaattggaattgatatattctgatcctgctcaaagattggtgggtgatattgcactttta
aattgtgagacagctgtggtatcagatcggcgtgggagcatatctgtattatcttccaca
agattggaagtttcagaaagtccacagaagaacttagccgtaaattgttcattttatatg
ggtgaaacagctatgagcattcagaaggctgcattcaggtatcggcttccaattgatgat
gatactgacccggtgcttgagtctgcttatgactgtattgtggcaagtaccttgctgggg
agtctctttgtcatgattccacttacaagtgaggagcatcggctgttgcaagatgtccaa
gaaagactctcagtacacccgttgactgcaccggtcttgggaaatgaccatgcagaattt
cgtcagcgcggtatcccgtcaggagtacctcccattcttgatggcgatatgcttgtgcaa
tttttggagctcactggtgaacagcagcaagccatccttgcacatgctttgccagggaaa
gggccacgcaggcctgtctcagtcttcgaggtcttgcgaacattggagcgtgttcactat
gcactcaactga
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integrated database retrieval system
